Browse Element(s) Details


OsAffx.25766.1.S1_at

Description tigr:9631.m05845
TID=OsAffx.25766.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative ubiquitin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5937011/11Ubiquitin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59320Os.10146.1.S1_at11/113+33710690..33712549expressed protein
LOC_Os03g59330OsAffx.25765.1.S1_at11/113+33716444..33719478Polygalacturonase family protein, expressed
LOC_Os03g59340Os.14979.1.S1_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59340Os.14979.1.S2_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59350OsAffx.13550.1.S1_s_at11/113+33726843..33728494UDP-glucose:flavonoid-O-glucosyltransferase, putative, expressed
LOC_Os03g59360Os.10572.1.S1_at11/113+33729890..33731707Remorin, C-terminal region family protein, expressed
LOC_Os03g59370OsAffx.25766.1.S1_at11/113+33735723..33736800Ubiquitin family protein
LOC_Os03g59380OsAffx.25767.1.S1_s_at10/113+33737883..33738699Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g59390Os.5004.1.S1_at10/113+33744763..33749033Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os03g59400OsAffx.13551.1.S1_at10/113+33750953..33751357hypothetical protein
LOC_Os03g59410NANA3+33756437..33762591retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25766.1.S1_at--558--5031Chr03:33736372..33736396 (25 bp)
GCAGTTGCATGTCCATGTCGCCGCC
LOC_Os03g59370
OsAffx.25766.1.S1_at--653--4571Chr03:33736199..33736223 (25 bp)
GCGCGAGGAACGTGGGCGAGCTCAC
LOC_Os03g59370
OsAffx.25766.1.S1_at--813--1571Chr03:33736181..33736205 (25 bp)
AGCTCACCGGCGAGGACTGGTCATC
LOC_Os03g59370
OsAffx.25766.1.S1_at--19--8391Chr03:33736173..33736197 (25 bp)
GGCGAGGACTGGTCATCCATCCGCG
LOC_Os03g59370
OsAffx.25766.1.S1_at--23--8131Chr03:33736168..33736192 (25 bp)
GGACTGGTCATCCATCCGCGCCGAG
LOC_Os03g59370
OsAffx.25766.1.S1_at--115--8351Chr03:33736066..33736090 (25 bp)
GGCGGCGAGCCGGATCAAGAACCAC
LOC_Os03g59370
OsAffx.25766.1.S1_at--996--4511Chr03:33736016..33736040 (25 bp)
GCCGCGTGGTCGTCGCCAAGCAGGC
LOC_Os03g59370
OsAffx.25766.1.S1_at--832--1951Chr03:33735993..33736013 (21 bp)
ACTGGAAGAACTACATACTGGAGAA
LOC_Os03g59370
OsAffx.25766.1.S1_at--448--2091Chr03:33735886..33736001 (25 bp)
ACATACTGGAGAATCCGGAGGCGGC
LOC_Os03g59370
OsAffx.25766.1.S1_at--124--491Chr03:33735835..33735859 (25 bp)
ATCTGGGCCGGCTCCGAGCAATCTT
LOC_Os03g59370
OsAffx.25766.1.S1_at--182--6191Chr03:33735781..33735805 (25 bp)
GAGGAGCCAAGTGCCGCGAGACGAA
LOC_Os03g59370
Target Sequence 
GCAGTTGCATGTCCATGTCGCCGCCGACGACGAGGAGAAGGCGATCAAGAGGAAGCCGGTGTCGCGGCGCGCGCTCCGCA
AGATCCTGTCGCGGCTGCAGGTGGACGCGTGGACGAGCCAGCACGACGCCAAGTTCCTCGACCTGCTGCTGCGCCACACG
GGCGGCGGCGGCGGCGCGAGGAACGTGGGCGAGCTCACCGGCGAGGACTGGTCATCCATCCGCGCCGAGCTGAACGCCGC
CACCGGGTCCGGCTTCCCCGTGGAGGAGCTCCAGCGGCGGCTGGGCGAGTTCCGGCGGGAGTTCGAGGCGGCGAGCCGGA
TCAAGAACCACCCCCGGTTCAGCTACGACCCTCGCCGCCGCGTGGTCGTCGCCAAGCAGGCCGACTGGAAGAACTACATA
CTGGAGAATCCGGAGGCGGCGGCGTACGAGGGGAGGAGCCCGCGGCATCTGGGCCGGCTCCGAGCAATCTTCTCCGGCGA
CGGCGGCGGCGGCGGCGGAGGAGGAGCCAAGTGCCGCGAGACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis