Browse Element(s) Details


OsAffx.25765.1.S1_at

Description tigr:9631.m05841
TID=OsAffx.25765.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative polygalacturonase precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5933011/11Polygalacturonase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59280OsAffx.3642.1.S1_s_at8/113+33691846..33692212NA
LOC_Os03g59290OsAffx.18938.2.S1_at10/113+33694301..33698230Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os03g59300Os.4980.1.S1_at11/113+33704394..33706711expressed protein
LOC_Os03g59310Os.11049.1.S1_at11/113+33707952..3370985640S ribosomal protein S2, putative, expressed
LOC_Os03g59320Os.10146.1.S1_at11/113+33710690..33712549expressed protein
LOC_Os03g59330OsAffx.25765.1.S1_at11/113+33716444..33719478Polygalacturonase family protein, expressed
LOC_Os03g59340Os.14979.1.S1_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59340Os.14979.1.S2_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59350OsAffx.13550.1.S1_s_at11/113+33726843..33728494UDP-glucose:flavonoid-O-glucosyltransferase, putative, expressed
LOC_Os03g59360Os.10572.1.S1_at11/113+33729890..33731707Remorin, C-terminal region family protein, expressed
LOC_Os03g59370OsAffx.25766.1.S1_at11/113+33735723..33736800Ubiquitin family protein
LOC_Os03g59380OsAffx.25767.1.S1_s_at10/113+33737883..33738699Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25765.1.S1_at--185--1491Chr03:33717776..33717800 (25 bp)
AGCAAGAACGTCCAAGTCAGCGACT
LOC_Os03g59330
OsAffx.25765.1.S1_at--897--7091Chr03:33717791..33717815 (25 bp)
GTCAGCGACTGCACCATTAAGACAG
LOC_Os03g59330
OsAffx.25765.1.S1_at--843--6371Chr03:33718520..33718544 (25 bp)
GATCGAGGATGGGACCCACGGTTTA
LOC_Os03g59330
OsAffx.25765.1.S1_at--784--1911Chr03:33718537..33718561 (25 bp)
ACGGTTTACACGTCACGAGACTGGT
LOC_Os03g59330
OsAffx.25765.1.S1_at--302--6151Chr03:33718620..33718644 (25 bp)
GAGGTGTCTGACATCTTCATCGACA
LOC_Os03g59330
OsAffx.25765.1.S1_at--245--10111Chr03:33718656..33718680 (25 bp)
TATGGCACCACCAATGGAGCTCGGA
LOC_Os03g59330
OsAffx.25765.1.S1_at--1075--1811Chr03:33718826..33718850 (25 bp)
ACGCCAAGGATATCGTATTCCAGAA
LOC_Os03g59330
OsAffx.25765.1.S1_at--799--2371Chr03:33718893..33718917 (25 bp)
AAACTACTGCGACTCAGCTAAGAAA
LOC_Os03g59330
OsAffx.25765.1.S1_at--473--2451Chr03:33719101..33719125 (25 bp)
AACAATTTCCAAGAGTGCCATCACT
LOC_Os03g59330
OsAffx.25765.1.S1_at--827--5471Chr03:33719140..33719164 (25 bp)
GAACTACCCATGCTATGACATTTCC
LOC_Os03g59330
OsAffx.25765.1.S1_at--652--7791Chr03:33719201..33719225 (25 bp)
GGTGCCACAGGAAGTACTTGCCAGA
LOC_Os03g59330
Target Sequence 
AGCAAGAACGTCCAAGTCAGCGACTGCACCATTAAGACAGGGGATGACTGTGTGTCGATCGAGGATGGGACCCACGGTTT
ACACGTCACGAGACTGGTGTGTGGGCCCGGGCATGGGATTAGCATTGGGAGCTTAGGAGATGACAACTCCAGAGCTGAGG
TGTCTGACATCTTCATCGACACCGTGCACCTCTATGGCACCACCAATGGAGCTCGGATCAAGACATGGCAGGGAGGGAGT
GGATACGCCAAGGATATCGTATTCCAGAACATGGTCATGAACAGTGTCAAGAACCCAATAATCATTGACCAAAACTACTG
CGACTCAGCTAAGAAATGCGAGACACAGGAGGGATCAGCAGTGGAGATTAGCAATGTGGTCTTCAAGAACATCGCAGGGA
CAACAATTTCCAAGAGTGCCATCACTCTGAACTGCAGCAAGAACTACCCATGCTATGACATTTCCTTACAGGACATCAAC
CTGGAAATGGTGGATGACAATGGTGCCACAGGAAGTACTTGCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis