Browse Element(s) Details


Os.4980.1.S1_at

Description gb:AK059286.1
DB_XREF= gi:32969304
TID=Os.4980.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4980 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-025-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D10, full insert sequence.
FL= gb:AK059286.1 gb:AK121037.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5930011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59264OsAffx.6138.1.S1_at2/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59264Os.47353.1.A1_at1/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59264OsAffx.23301.2.S1_at1/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59280OsAffx.3642.1.S1_s_at8/113+33691846..33692212NA
LOC_Os03g59290OsAffx.18938.2.S1_at10/113+33694301..33698230Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os03g59300Os.4980.1.S1_at11/113+33704394..33706711expressed protein
LOC_Os03g59310Os.11049.1.S1_at11/113+33707952..3370985640S ribosomal protein S2, putative, expressed
LOC_Os03g59320Os.10146.1.S1_at11/113+33710690..33712549expressed protein
LOC_Os03g59330OsAffx.25765.1.S1_at11/113+33716444..33719478Polygalacturonase family protein, expressed
LOC_Os03g59340Os.14979.1.S1_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59340Os.14979.1.S2_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59350OsAffx.13550.1.S1_s_at11/113+33726843..33728494UDP-glucose:flavonoid-O-glucosyltransferase, putative, expressed
LOC_Os03g59360Os.10572.1.S1_at11/113+33729890..33731707Remorin, C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4980.1.S1_at--251--9851Chr03:33706235..33706259 (25 bp)
TACAACCTATCGTTCGTCGTCGGCG
LOC_Os03g59300
Os.4980.1.S1_at--1076--1431Chr03:33706266..33706290 (25 bp)
AGAACGGCTGCCACGGGTCGATGCT
LOC_Os03g59300
Os.4980.1.S1_at--145--5791Chr03:33706315..33706339 (25 bp)
GACGCAGAAGGTGCCGTTCGAGTCC
LOC_Os03g59300
Os.4980.1.S1_at--624--6431Chr03:33706472..33706496 (25 bp)
GATCAGGTCAAGGTCCAGCCATTGA
LOC_Os03g59300
Os.4980.1.S1_at--270--1371Chr03:33706522..33706546 (25 bp)
AGAGCTCTCCTTTCGGATCATGGTT
LOC_Os03g59300
Os.4980.1.S1_at--598--6431Chr03:33706537..33706561 (25 bp)
GATCATGGTTTGCTAATTGCTCTAC
LOC_Os03g59300
Os.4980.1.S1_at--332--71Chr03:33706552..33706576 (25 bp)
ATTGCTCTACTTAGACGTCGTGTCT
LOC_Os03g59300
Os.4980.1.S1_at--447--5751Chr03:33706565..33706589 (25 bp)
GACGTCGTGTCTGTAAAACTCTGCA
LOC_Os03g59300
Os.4980.1.S1_at--613--5471Chr03:33706614..33706638 (25 bp)
GAACTTTCGTGTGATCTAGCTAAAC
LOC_Os03g59300
Os.4980.1.S1_at--691--51Chr03:33706653..33706677 (25 bp)
ATTGTTGCCTGTAATGTCGCTATCG
LOC_Os03g59300
Os.4980.1.S1_at--686--7231Chr03:33706668..33706692 (25 bp)
GTCGCTATCGATCGTTGATGATGTT
LOC_Os03g59300
Target Sequence 
TACAACCTATCGTTCGTCGTCGGCGACGCCAAGAACGGCTGCCACGGGTCGATGCTGGTGGAGGCGTTCGCCGGGAACGT
GACGCAGAAGGTGCCGTTCGAGTCCGTCGGAAACGGCGGGTTCAAGCCGGCGAGCTTCCGGTTCGTCGCCGCCGGCGTGC
GCACCAGGGTGACCTTCTACAGCTCGTACTACCACACCAAGGTGAGCGACGGCGTCTCGCTGTGCGGCCCCGTGCTGGAT
CAGGTCAAGGTCCAGCCATTGAAGGCGTGATGATCCCCCTACGATTCAGAGCTCTCCTTTCGGATCATGGTTTGCTAATT
GCTCTACTTAGACGTCGTGTCTGTAAAACTCTGCATTGGTGATTTGGGTTTTGGACATTGAACTTTCGTGTGATCTAGCT
AAACATTGTGTCATGGTTATTGTTGCCTGTAATGTCGCTATCGATCGTTGATGATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis