Browse Element(s) Details


OsAffx.18938.2.S1_at

Description tigr:9631.m05836
TID=OsAffx.18938.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative endosperm C-24 sterol methyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5929010/11Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59240Os.17885.1.S1_s_at11/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59240OsAffx.13549.1.S1_at11/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59240Os.55265.1.S1_at2/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59250Os.5257.1.S1_at11/113+33676390..33678431expressed protein
LOC_Os03g59264OsAffx.6138.1.S1_at2/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59264Os.47353.1.A1_at1/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59264OsAffx.23301.2.S1_at1/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59280OsAffx.3642.1.S1_s_at8/113+33691846..33692212NA
LOC_Os03g59290OsAffx.18938.2.S1_at10/113+33694301..33698230Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os03g59300Os.4980.1.S1_at11/113+33704394..33706711expressed protein
LOC_Os03g59310Os.11049.1.S1_at11/113+33707952..3370985640S ribosomal protein S2, putative, expressed
LOC_Os03g59320Os.10146.1.S1_at11/113+33710690..33712549expressed protein
LOC_Os03g59330OsAffx.25765.1.S1_at11/113+33716444..33719478Polygalacturonase family protein, expressed
LOC_Os03g59340Os.14979.1.S1_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59340Os.14979.1.S2_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009825biological_processmultidimensional cell growth
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0016126biological_processsterol biosynthesis
GO:0042023biological_processDNA endoreduplication
GO:0005783cellular_componentendoplasmic reticulum
GO:0003838molecular_functionsterol 24-C-methyltransferase activity
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18938.2.S1_at--124--611Chr03:33696512..33696867 (25 bp)
ATGCCCCTGATGCTGTTGGTGTCTA
LOC_Os03g59290
OsAffx.18938.2.S1_at--586--8051Chr03:33696484..33696508 (25 bp)
GGAGATCTGCCGAGTGCTGAAACCA
LOC_Os03g59290
OsAffx.18938.2.S1_at--637--5531Chr03:33696466..33696490 (25 bp)
GAAACCAGGGCAGTTGTTCGCGTTG
LOC_Os03g59290
OsAffx.18938.2.S1_at--879--6911Chr03:33696418..33696442 (25 bp)
GTATGATCCAGGCAACTCGAGGCAC
LOC_Os03g59290
OsAffx.18938.2.S1_at--214--8231Chr03:33696366..33696390 (25 bp)
GGCAATGGCCTTCCAGACATCAGAA
LOC_Os03g59290
OsAffx.18938.2.S1_at--1119--2391Chr03:33696336..33696360 (25 bp)
AAACAGTGCATCCAGGCTCTCAAAG
LOC_Os03g59290
OsAffx.18938.2.S1_at--233--2771Chr03:33695911..33696338 (25 bp)
AAGACGCGGGCTTTGAGGTTGTATC
LOC_Os03g59290
OsAffx.18938.2.S1_at--271--4911Chr03:33695791..33695812 (22 bp)
GCTTCATCACTCACATGCTGGTAAA
LOC_Os03g59290
OsAffx.18938.2.S1_at--1098--9111Chr03:33695602..33695622 (21 bp)
TGCTGGTAAAGACGCTCGAGTGCCT
LOC_Os03g59290
OsAffx.18938.2.S1_at--861--1551Chr03:33695543..33695567 (25 bp)
AGCTTTCTTGAGACCGCGGCCGAAG
LOC_Os03g59290
OsAffx.18938.2.S1_at--1118--2911NONE
AAGGAAGGGATCTTCACGCCCATTT
NONE
Target Sequence 
ATGCCCCTGATGCTGTTGGTGTCTACAGGGAGATCTGCCGAGTGCTGAAACCAGGGCAGTTGTTCGCGTTGGACGAGTGG
TGCATGACCGACAAGTATGATCCAGGCAACTCGAGGCACCGGAGCATCAAGGCCGAGATCGAGCTCGGCAATGGCCTTCC
AGACATCAGAACCACCAAACAGTGCATCCAGGCTCTCAAAGACGCGGGCTTTGAGGTTGTATCGGTGAAGGATCTGGCAG
AGGATTCGCCGTTGCCATGGTACCTGCCTCTTGATTCCAGCCAGTTCTCACTCAATGGCTTCCGTCTCACCCGTGTCGGC
CGCTTCATCACTCACATGCTGGTAAAGACGCTCGAGTGCCTCCATGTTGCCCCACAGGGCAGCCTGAGGGTCTCCAGCTT
TCTTGAGACCGCGGCCGAAGGGCTTGTGAAGGGCGCCAAGGAAGGGATCTTCACGCCCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18938.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis