Browse Element(s) Details


OsAffx.13549.1.S1_at

Description tigr:9631.m05831
TID=OsAffx.13549.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5924011/11Carboxyl-terminal peptidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59190OsAffx.8923.1.S1_at9/113+33641413..33646074retrotransposon protein, putative, unclassified
LOC_Os03g59190Os.51887.1.S1_x_at1/113+33641413..33646074retrotransposon protein, putative, unclassified
LOC_Os03g59200Os.49605.1.A1_at11/113+33650407..33652500expressed protein
LOC_Os03g59210Os.12392.1.S1_at4/113+33655980..33656344hypothetical protein
LOC_Os03g59220Os.6828.1.S1_at11/113+33657474..33659565Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative, expressed
LOC_Os03g59240Os.17885.1.S1_s_at11/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59240OsAffx.13549.1.S1_at11/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59240Os.55265.1.S1_at2/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59250Os.5257.1.S1_at11/113+33676390..33678431expressed protein
LOC_Os03g59264OsAffx.6138.1.S1_at2/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59264Os.47353.1.A1_at1/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59264OsAffx.23301.2.S1_at1/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59280OsAffx.3642.1.S1_s_at8/113+33691846..33692212NA
LOC_Os03g59290OsAffx.18938.2.S1_at10/113+33694301..33698230Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13549.1.S1_at--141--8591Chr03:33673904..33673928 (25 bp)
TGGTTATGGAGCTTCTCTCTTGGGC
LOC_Os03g59240
OsAffx.13549.1.S1_at--1029--10091Chr03:33673908..33673932 (25 bp)
TATGGAGCTTCTCTCTTGGGCTTAA
LOC_Os03g59240
OsAffx.13549.1.S1_at--1111--5911Chr03:33673912..33673936 (25 bp)
GAGCTTCTCTCTTGGGCTTAACTAA
LOC_Os03g59240
OsAffx.13549.1.S1_at--612--9511Chr03:33673919..33673943 (25 bp)
TCTCTTGGGCTTAACTAAAGGGTCA
LOC_Os03g59240
OsAffx.13549.1.S1_at--848--2011Chr03:33673932..33673956 (25 bp)
ACTAAAGGGTCAGAGGGCCATGCTT
LOC_Os03g59240
OsAffx.13549.1.S1_at--597--7691Chr03:33673938..33673962 (25 bp)
GGGTCAGAGGGCCATGCTTTATTTT
LOC_Os03g59240
OsAffx.13549.1.S1_at--1026--7091Chr03:33673940..33673964 (25 bp)
GTCAGAGGGCCATGCTTTATTTTTC
LOC_Os03g59240
OsAffx.13549.1.S1_at--715--10411Chr03:33673956..33673980 (25 bp)
TTATTTTTCTCATGTCACCTTTACC
LOC_Os03g59240
OsAffx.13549.1.S1_at--1058--171Chr03:33673958..33673982 (25 bp)
ATTTTTCTCATGTCACCTTTACCTC
LOC_Os03g59240
OsAffx.13549.1.S1_at--362--9631Chr03:33673965..33673989 (25 bp)
TCATGTCACCTTTACCTCCTTTGAA
LOC_Os03g59240
OsAffx.13549.1.S1_at--962--8731Chr03:33673968..33673992 (25 bp)
TGTCACCTTTACCTCCTTTGAATGT
LOC_Os03g59240
Target Sequence 
TGGTTATGGAGCTTCTCTCTTGGGCTTAACTAAAGGGTCAGAGGGCCATGCTTTATTTTTCTCATGTCACCTTTACCTCC
TTTGAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis