Browse Element(s) Details


Os.17885.1.S1_s_at

Description gb:CR283495
DB_XREF= gi:44670061
DB_XREF=CR283495
CLONE=p537e06p3
TID=Os.17885.1
CNT=11
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17885 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_175933.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5924011/11Carboxyl-terminal peptidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59190OsAffx.8923.1.S1_at9/113+33641413..33646074retrotransposon protein, putative, unclassified
LOC_Os03g59190Os.51887.1.S1_x_at1/113+33641413..33646074retrotransposon protein, putative, unclassified
LOC_Os03g59200Os.49605.1.A1_at11/113+33650407..33652500expressed protein
LOC_Os03g59210Os.12392.1.S1_at4/113+33655980..33656344hypothetical protein
LOC_Os03g59220Os.6828.1.S1_at11/113+33657474..33659565Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative, expressed
LOC_Os03g59240Os.17885.1.S1_s_at11/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59240OsAffx.13549.1.S1_at11/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59240Os.55265.1.S1_at2/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59250Os.5257.1.S1_at11/113+33676390..33678431expressed protein
LOC_Os03g59264OsAffx.6138.1.S1_at2/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59264Os.47353.1.A1_at1/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59264OsAffx.23301.2.S1_at1/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59280OsAffx.3642.1.S1_s_at8/113+33691846..33692212NA
LOC_Os03g59290OsAffx.18938.2.S1_at10/113+33694301..33698230Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17885.1.S1_s_at--750--5171Chr03:33673545..33673569 (25 bp)
GCAATCGAACTGCTACGACGTGCAA
LOC_Os03g59240
Os.17885.1.S1_s_at--362--8011Chr03:33673609..33673633 (25 bp)
GGAGGCCCTGGAAGGAGCTCAAACT
LOC_Os03g59240
Os.17885.1.S1_s_at--317--4831Chr03:33673625..33673649 (25 bp)
GCTCAAACTGCCCATGACAACTGAA
LOC_Os03g59240
Os.17885.1.S1_s_at--353--2551Chr03:33673650..33673674 (25 bp)
AACTGAACTGAACACCCTGAGCAAG
LOC_Os03g59240
Os.17885.1.S1_s_at--648--1111Chr03:33673689..33673713 (25 bp)
AGTGTAATACACCATCTGCTCCAGT
LOC_Os03g59240
Os.17885.1.S1_s_at--1000--3811Chr03:33673704..33673728 (25 bp)
CTGCTCCAGTTTTTTAGCCCTAGAT
LOC_Os03g59240
Os.17885.1.S1_s_at--1083--8651Chr03:33673731..33673755 (25 bp)
TGTGTGTCATGTGAATGGGTCCCCG
LOC_Os03g59240
Os.17885.1.S1_s_at--670--8811Chr03:33673757..33673781 (25 bp)
TGTTGCTTTCTAATCTCTCTCTGCC
LOC_Os03g59240
Os.17885.1.S1_s_at--1014--4411Chr03:33673862..33673886 (25 bp)
GCCTACCTCCTTTTTCCTATATGGT
LOC_Os03g59240
Os.17885.1.S1_s_at--1057--8571Chr03:33674017..33674041 (25 bp)
TGGTAGGATTCAGTTACTCAGCAAC
LOC_Os03g59240
Os.17885.1.S1_s_at--258--1491Chr03:33674036..33674060 (25 bp)
AGCAACTTGTATGCCATTCCCATGG
LOC_Os03g59240
Target Sequence 
GCAATCGAACTGCTACGACGTGCAAAACGGTAACAATGCCGACTGGGGCACATACTTCTACTATGGAGGCCCTGGAAGGA
GCTCAAACTGCCCATGACAACTGAAAACTGAACTGAACACCCTGAGCAAGTGTTTAACCATTCAAGTGTAATACACCATC
TGCTCCAGTTTTTTAGCCCTAGATAGTGTGTGTCATGTGAATGGGTCCCCGGNTGTTGCTTTCTAATCTCTCTCTGCCTT
GAGCTTTCTTTCTTCCTTTTTTGTAATGCCAAGTCTTCTGAAGAGAAGCAATGGCATCTGGTGGTGGTTGTGGTGATGGC
CTACCTCCTTTTTCCTATATGGTAGATTCACTTGTCTTTCTGGTTATGGAGNTTCTCTNTTGGGNTTANCTAAAGGNTNA
NAGGGCCATGNNTTATTTNNCTCATGNNACCTTNACCTCCTTTGAATGTCAGTGGTGTATAGGAAAGAGGAATTGGTAGG
ATTCAGTTACTCAGCAACTTGTATGCCATTCCCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17885.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis