Browse Element(s) Details


Os.6828.1.S1_at

Description gb:AK121708.1
DB_XREF= gi:37991331
TID=Os.6828.1
CNT=40
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075L07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075L07, full insert sequence.
FL= gb:AK121708.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5922011/11Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59170Os.16646.1.A1_at11/113+33632042..33635164adenosine 5'-phosphosulfate reductase 8, putative, expressed
LOC_Os03g59180Os.31151.2.S1_at11/113+33636039..33637411expressed protein
LOC_Os03g59190OsAffx.8923.1.S1_at9/113+33641413..33646074retrotransposon protein, putative, unclassified
LOC_Os03g59190Os.51887.1.S1_x_at1/113+33641413..33646074retrotransposon protein, putative, unclassified
LOC_Os03g59200Os.49605.1.A1_at11/113+33650407..33652500expressed protein
LOC_Os03g59210Os.12392.1.S1_at4/113+33655980..33656344hypothetical protein
LOC_Os03g59220Os.6828.1.S1_at11/113+33657474..33659565Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative, expressed
LOC_Os03g59240Os.17885.1.S1_s_at11/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59240OsAffx.13549.1.S1_at11/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59240Os.55265.1.S1_at2/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59250Os.5257.1.S1_at11/113+33676390..33678431expressed protein
LOC_Os03g59264OsAffx.6138.1.S1_at2/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59264Os.47353.1.A1_at1/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59264OsAffx.23301.2.S1_at1/113+33683291..33689374Calreticulin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006122biological_processmitochondrial electron transport, ubiquinol to cytochrome c
GO:0005739cellular_componentmitochondrion
GO:0008121molecular_functionubiquinol-cytochrome-c reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6828.1.S1_at--558--7811Chr03:33657828..33657852 (25 bp)
GGTACGACGATCTGTACGACCCGAA
LOC_Os03g59220
Os.6828.1.S1_at--276--1871Chr03:33657843..33657867 (25 bp)
ACGACCCGAAGCATGATCTGGACAT
LOC_Os03g59220
Os.6828.1.S1_at--522--5691Chr03:33657958..33657980 (23 bp)
GTACCTCTCCGAAAACGACCAGGCG
LOC_Os03g59220
Os.6828.1.S1_at--39--5331Chr03:33659266..33659290 (25 bp)
GAAGTCTTATCTTGATAGGCCCTGC
LOC_Os03g59220
Os.6828.1.S1_at--724--8831Chr03:33659278..33659302 (25 bp)
TGATAGGCCCTGCTGTTTTTTCCCA
LOC_Os03g59220
Os.6828.1.S1_at--662--10392Chr12:19802816..19802874 (25 bp)
TTTTCCCACCACAATGCATCAAATA
NONE
Os.6828.1.S1_at--962--7511Chr03:33659327..33659351 (25 bp)
GTGGATGACTCATGATACTGTCTCT
LOC_Os03g59220
Os.6828.1.S1_at--368--2251Chr03:33659474..33659498 (25 bp)
AAATTCTTCATGTATTGTGCTTCAC
LOC_Os03g59220
Os.6828.1.S1_at--971--5371Chr03:33659503..33659527 (25 bp)
GAAGAATGTCTGTTGTTTGCTCAGA
LOC_Os03g59220
Os.6828.1.S1_at--219--5291Chr03:33659526..33659550 (25 bp)
GAATGGCTTTTGTTTTACCACCTAT
LOC_Os03g59220
Os.6828.1.S1_at--104--9991Chr03:33659541..33659565 (25 bp)
TACCACCTATTGTTTTGATTATGCC
LOC_Os03g59220
Target Sequence 
GGTACGACGATCTGTACGACCCGAAGCATGATCTGGACATCAAGGAGGCGCTCGAGAGGCTTCCCAGGGAGGTGGTCGAC
GCCCGCCACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCTCCGAAAACGACCAGGCGCAACA
GACACCATTCAGAGGCTATTTGAGTGACATGATGGATCTGGTGAAGAAGGAGAGATTAGAGCGTGAAGAACTGGGAGCCC
TTCCCCTTCACCAGAGGACCCTTCCCTGAAGTCTTATCTTGATAGGCCCTGCTGTTTTTTCCCACCACAATGCATCAAAT
AAAATGCAGTGGATGACTCATGATACTGTCTCTCATTTTGAAGTTCCATTTTCATATATATTCGTGTGTGATGCATTGGT
CGTCACTGATTACTTCGCATCCTTTTCAAATATGTTAATTTAACAGCAACAATTTTTCTTTTACATCATTGTCGTAAATT
CTTCATGTATTGTGCTTCACATGAGAAGAATGTCTGTTGTTTGCTCAGAATGGCTTTTGTTTTACCACCTATTGTTTTGA
TTATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis