Browse Element(s) Details


Os.5257.1.S1_at

Description gb:AK103496.1
DB_XREF= gi:32988705
TID=Os.5257.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5257 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131A04, full insert sequence.
FL= gb:AK063932.1 gb:AK122072.1 gb:AK103496.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5925011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59200Os.49605.1.A1_at11/113+33650407..33652500expressed protein
LOC_Os03g59210Os.12392.1.S1_at4/113+33655980..33656344hypothetical protein
LOC_Os03g59220Os.6828.1.S1_at11/113+33657474..33659565Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative, expressed
LOC_Os03g59240Os.17885.1.S1_s_at11/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59240OsAffx.13549.1.S1_at11/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59240Os.55265.1.S1_at2/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59250Os.5257.1.S1_at11/113+33676390..33678431expressed protein
LOC_Os03g59264OsAffx.6138.1.S1_at2/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59264Os.47353.1.A1_at1/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59264OsAffx.23301.2.S1_at1/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59280OsAffx.3642.1.S1_s_at8/113+33691846..33692212NA
LOC_Os03g59290OsAffx.18938.2.S1_at10/113+33694301..33698230Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5257.1.S1_at--840--1331Chr03:33676919..33676943 (25 bp)
AGAGGGAGGATCACCGGCTCTCCTA
LOC_Os03g59250
Os.5257.1.S1_at--568--1431Chr03:33676821..33676845 (25 bp)
AGAACTAAGCCTATCGACCGAAATA
LOC_Os03g59250
Os.5257.1.S1_at--341--431Chr03:33676784..33676808 (25 bp)
ATCATTCCTGATCTAGCAAGTTTGT
LOC_Os03g59250
Os.5257.1.S1_at--808--6851Chr03:33676765..33676789 (25 bp)
GTTTGTAGCTCAGACCTTAAAGGCA
LOC_Os03g59250
Os.5257.1.S1_at--159--2911Chr03:33676746..33676770 (25 bp)
AAGGCACCGCGGAGTTTGGTCACCA
LOC_Os03g59250
Os.5257.1.S1_at--593--5051Chr03:33676673..33676697 (25 bp)
GCAGCAATGCATGGTCTATGAGTCT
LOC_Os03g59250
Os.5257.1.S1_at--169--5011Chr03:33676600..33676624 (25 bp)
GCATGGTGCATTTTGGTGCCTCAAT
LOC_Os03g59250
Os.5257.1.S1_at--1103--8431Chr03:33676537..33676561 (25 bp)
GGCCAGCTGGCCATTCAAATAGGTT
LOC_Os03g59250
Os.5257.1.S1_at--371--7871Chr03:33676516..33676540 (25 bp)
GGTTACTACTGAATCCCAAATATTG
LOC_Os03g59250
Os.5257.1.S1_at--148--5371Chr03:33676474..33676498 (25 bp)
GAAGAGAACGCCGTGTGCAGGCCAT
LOC_Os03g59250
Os.5257.1.S1_at--175--6571Chr03:33676432..33676456 (25 bp)
GATTCATGGTTAGACTGTTTCTCCT
LOC_Os03g59250
Target Sequence 
AGAGGGAGGATCACCGGCTCTCCTACTATCCTTATNTCACCACCCCTGTATCTCCATCCTTTTTTTGTTCATTCGTTGTT
CCAAACAAATCGTCATCTAGAACTAAGCCTATCGACCGAAATAGTTGTATATTAGATCATTCCTGATCTAGCAAGTTTGT
AGCTCAGACCTTAAAGGCACCGCGGAGTTTGGTCACCACTGAAGTGAAAGTAAATGAAAACGAAGAGAGAGAGCTTAAGA
TGGAAGGCAGCAATGCATGGTCTATGAGTCTATCATGATTTGGGATTGAGAAAGAAGATGGGAGGTTGTTGGGTATGGTG
CATGGTGCATTTTGGTGCCTCAATTGTTGTAACAGTAACACCAAGTTGGGAGGAAGATTTGAGGCCAGCTGGCCATTCAA
ATAGGTTACTACTGAATCCCAAATATTGTAATCCTAGTTGATGTTGAAGAGAACGCCGTGTGCAGGCCATGCCTGGGCAT
GATCCTGGATTCATGGTTAGACTGTTTCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis