Browse Element(s) Details


Os.12392.1.S1_at

Description gb:AK120337.1
DB_XREF= gi:37989960
TID=Os.12392.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12392 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-034-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059N15, full insert sequence.
FL= gb:AK120337.1 gb:AK061623.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g592104/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59160Os.25442.1.S1_at7/113+33627208..33631182Elongation factor P family protein, expressed
LOC_Os03g59170Os.16646.1.A1_at11/113+33632042..33635164adenosine 5'-phosphosulfate reductase 8, putative, expressed
LOC_Os03g59180Os.31151.2.S1_at11/113+33636039..33637411expressed protein
LOC_Os03g59190OsAffx.8923.1.S1_at9/113+33641413..33646074retrotransposon protein, putative, unclassified
LOC_Os03g59190Os.51887.1.S1_x_at1/113+33641413..33646074retrotransposon protein, putative, unclassified
LOC_Os03g59200Os.49605.1.A1_at11/113+33650407..33652500expressed protein
LOC_Os03g59210Os.12392.1.S1_at4/113+33655980..33656344hypothetical protein
LOC_Os03g59220Os.6828.1.S1_at11/113+33657474..33659565Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative, expressed
LOC_Os03g59240Os.17885.1.S1_s_at11/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59240OsAffx.13549.1.S1_at11/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59240Os.55265.1.S1_at2/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59250Os.5257.1.S1_at11/113+33676390..33678431expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12392.1.S1_at--374--951Chr03:33656013..33656037 (25 bp)
AGGAAGCTCTGGGTTCGTGCGCATT
LOC_Os03g59210
Os.12392.1.S1_at--629--3211Chr03:33656245..33656269 (25 bp)
CAAGGATGTCAAGTCTTGCCAGGAT
LOC_Os03g59210
Os.12392.1.S1_at--461--6171Chr03:33656270..33656294 (25 bp)
GAGGATGTGCATGTTCTATGGTCCA
LOC_Os03g59210
Os.12392.1.S1_at--282--231Chr03:33656294..33656318 (25 bp)
ATATTGGTGGATTCGCACCGTCACC
LOC_Os03g59210
Os.12392.1.S1_at--563--5391Chr03:33656329..33656353 (25 bp)
GAAGCTGAAGCTCTAGGGTTCTTGA
NONE
Os.12392.1.S1_at--11--10611Chr03:33656387..33656411 (25 bp)
TTCTGTGATTTTGCCGTTTACTCGG
NONE
Os.12392.1.S1_at--3--2011Chr03:33656406..33656430 (25 bp)
ACTCGGCCATTACCTCTGTATAGAA
NONE
Os.12392.1.S1_at--37--271Chr03:33656500..33656524 (25 bp)
ATATGCCTTTCTTGTGTGTATTGAT
NONE
Os.12392.1.S1_at--905--51Chr03:33656519..33656543 (25 bp)
ATTGATGTTTCTGTCTTGTGGCTTT
NONE
Os.12392.1.S1_at--83--7911Chr03:33656552..33656576 (25 bp)
GGTTGAAATGTCACCTTTGGTTGAT
NONE
Os.12392.1.S1_at--318--9091Chr03:33656621..33656645 (25 bp)
TGCTCTGATGCCTTACCTAATGGTA
NONE
Target Sequence 
AGGAAGCTCTGGGTTCGTGCGCATTCCGCACGTCGAAACCGGAGGGGAATGCACATTCTGTACAAGGATGTCAAGTCTTG
CCAGGATGAGGATGTGCATGTTCTATGGTCCATATTGGTGGATTCGCACCGTCACCCAGCTCTGATGAAGCTGAAGCTCT
AGGGTTCTTGAAGAACAGAGCAAGGATGATGGCAGCTATGAATTTTCTGTGATTTTGCCGTTTACTCGGCCATTACCTCT
GTATAGAACAGCATGATTTCAATGGCATCAAGATTGAAGGGGCAAAAAAAATAGAAGGACAAAATAGGCAGATGTTTATA
TGCCTTTCTTGTGTGTATTGATGTTTCTGTCTTGTGGCTTTGTGAGTGAGGTTGAAATGTCACCTTTGGTTGATGTGAAT
GCGAGTGAGGTTGAGTTTAATGTATTTGTATATACAGATGCTCTGATGCCTTACCTAATGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis