Browse Element(s) Details


OsAffx.3642.1.S1_s_at

Description tigr:9631.m05835
TID=OsAffx.3642.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative phytocyanin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g592808/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59240Os.17885.1.S1_s_at11/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59240OsAffx.13549.1.S1_at11/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59240Os.55265.1.S1_at2/113+33670350..33674092Carboxyl-terminal peptidase, putative, expressed
LOC_Os03g59250Os.5257.1.S1_at11/113+33676390..33678431expressed protein
LOC_Os03g59264OsAffx.6138.1.S1_at2/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59264Os.47353.1.A1_at1/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59264OsAffx.23301.2.S1_at1/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59280OsAffx.3642.1.S1_s_at8/113+33691846..33692212NA
LOC_Os03g59290OsAffx.18938.2.S1_at10/113+33694301..33698230Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os03g59300Os.4980.1.S1_at11/113+33704394..33706711expressed protein
LOC_Os03g59310Os.11049.1.S1_at11/113+33707952..3370985640S ribosomal protein S2, putative, expressed
LOC_Os03g59320Os.10146.1.S1_at11/113+33710690..33712549expressed protein
LOC_Os03g59330OsAffx.25765.1.S1_at11/113+33716444..33719478Polygalacturonase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3642.1.S1_s_at--383--3791Chr03:33691882..33691906 (25 bp)
CTCGGGCTCGCAATGGCGGCGACAT
LOC_Os03g59280
OsAffx.3642.1.S1_s_at--956--3931Chr03:33691913..33691937 (25 bp)
CGGCGGTCTACAAGGTCGGCGACAC
LOC_Os03g59280
OsAffx.3642.1.S1_s_at--76--4671Chr03:33691915..33691939 (25 bp)
GCGGTCTACAAGGTCGGCGACACCT
LOC_Os03g59280
OsAffx.3642.1.S1_s_at--1007--9271Chr03:33691939..33691963 (25 bp)
TCCGGCTGGACCATCCTCGGCAATG
LOC_Os03g59280
OsAffx.3642.1.S1_s_at--1139--9251Chr03:33691952..33691976 (25 bp)
TCCTCGGCAATGTCAATTACACTGA
LOC_Os03g59280
OsAffx.3642.1.S1_s_at--779--7071Chr03:33691963..33691987 (25 bp)
GTCAATTACACTGACTGGGCTGTCA
LOC_Os03g59280
OsAffx.3642.1.S1_s_at--904--131Chr03:33691967..33691991 (25 bp)
ATTACACTGACTGGGCTGTCAAGAA
LOC_Os03g59280
OsAffx.3642.1.S1_s_at--251--5731Chr03:33691975..33691999 (25 bp)
GACTGGGCTGTCAAGAAGACCTTCC
LOC_Os03g59280
OsAffx.3642.1.S1_s_at--962--5291Chr03:33694292..33694316 (25 bp)
GAAGGCGGACTACGACAGCTGCACC
NONE
OsAffx.3642.1.S1_s_at--332--4691Chr03:33694296..33694320 (25 bp)
GCGGACTACGACAGCTGCACCAACT
NONE
OsAffx.3642.1.S1_s_at--18--4131Chr03:33694643..33694667 (25 bp)
CGCTAAGGCGGCCTTCGCTGCCGTG
NONE
Target Sequence 
CTCGGGCTCGCAATGGCGGCGACATCGTCGGCGGCGGTCTACAAGGTCGGCGACACCTCCGGCTGGACCATCCTCGGCAA
TGTCAATTACACTGACTGGGCTGTCAAGAAGACCTTCCATGGGATTCACAACGTGGTGGAGGTGAAGAAGGCGGACTACG
ACAGCTGCACCAACTCGTCGCCGATCGCCACGCACACCTCCGGCGACGACAAGATCGCCATCAAGGCCGCCGGCCACCGC
TTCTTCATCTGCGGCGTCCCCGGCCACTGCGCCGCCGGCCAGAAGGTCAACATCCGCGTCCTCAAGCCACAGCGCTCCTC
CTCCTCTGACGCCCCTTCCCCGGCGCCCGCCGCCTCCAAGCGCGGCGCCGCCGCCGCGCCGTCCCCCGCCGTCTCGTCGT
CGCCGCCGGAGTCCTCCTCCCCCACCACGGACAGCTCGTCCTCCTCCACGACCACCGCTCCGGCGCCCAACGCCAGCGCC
GCCGCCGGCGGCGGCGGCGCTAAGGCGGCCTTCGCTGCCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3642.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis