Browse Element(s) Details


Os.11049.1.S1_at

Description gb:AK064984.1
DB_XREF= gi:32975002
TID=Os.11049.1
CNT=43
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.11049 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001C14, full insert sequence.
FL= gb:AK064984.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5931011/1140S ribosomal protein S2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59264OsAffx.6138.1.S1_at2/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59264Os.47353.1.A1_at1/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59264OsAffx.23301.2.S1_at1/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59280OsAffx.3642.1.S1_s_at8/113+33691846..33692212NA
LOC_Os03g59290OsAffx.18938.2.S1_at10/113+33694301..33698230Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os03g59300Os.4980.1.S1_at11/113+33704394..33706711expressed protein
LOC_Os03g59310Os.11049.1.S1_at11/113+33707952..3370985640S ribosomal protein S2, putative, expressed
LOC_Os03g59320Os.10146.1.S1_at11/113+33710690..33712549expressed protein
LOC_Os03g59330OsAffx.25765.1.S1_at11/113+33716444..33719478Polygalacturonase family protein, expressed
LOC_Os03g59340Os.14979.1.S1_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59340Os.14979.1.S2_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59350OsAffx.13550.1.S1_s_at11/113+33726843..33728494UDP-glucose:flavonoid-O-glucosyltransferase, putative, expressed
LOC_Os03g59360Os.10572.1.S1_at11/113+33729890..33731707Remorin, C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005622cellular_componentintracellular
GO:0005840cellular_componentribosome
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11049.1.S1_at--255--8151Chr03:33708534..33708558 (25 bp)
GGAAAGTGTGGCTCTGTCACCGTGC
LOC_Os03g59310
Os.11049.1.S1_at--138--10271Chr03:33709492..33709516 (25 bp)
TTTGACTGCCTGATGAAGACTTATG
LOC_Os03g59310
Os.11049.1.S1_at--823--5691Chr03:33709509..33709533 (25 bp)
GACTTATGGATTCCTTACTCCTGAC
LOC_Os03g59310
Os.11049.1.S1_at--425--9271Chr03:33709527..33709551 (25 bp)
TCCTGACTTCTGGAGGGACACCAAG
LOC_Os03g59310
Os.11049.1.S1_at--344--2831Chr03:33709549..33709573 (25 bp)
AAGTTCGTCAAGTCTCCATTCCAGG
LOC_Os03g59310
Os.11049.1.S1_at--222--991Chr03:33709571..33709595 (25 bp)
AGGAGTACACCGACCTCTTGGCCAA
LOC_Os03g59310
Os.11049.1.S1_at--67--10871Chr03:33709588..33709612 (25 bp)
TTGGCCAAGCCGACTAAGGCTCTTA
LOC_Os03g59310
Os.11049.1.S1_at--918--8311Chr03:33709605..33709629 (25 bp)
GGCTCTTATGATTGATGCACCTGTC
LOC_Os03g59310
Os.11049.1.S1_at--1091--11Chr03:33709615..33709639 (25 bp)
ATTGATGCACCTGTCGAGAACGTAG
LOC_Os03g59310
Os.11049.1.S1_at--757--2731Chr03:33709714..33709738 (25 bp)
AAGAACCGGTTGTCATCCTTGGATT
LOC_Os03g59310
Os.11049.1.S1_at--232--751Chr03:33709752..33709776 (25 bp)
ATGTTTCTATTTCCTGTCAAGTTTT
LOC_Os03g59310
Target Sequence 
GGAAAGTGTGGCTCTGTCACCGTGCGCATGGTGCCCGCCCCGAGGGGTTCGGGTATTGTCGCCGCCCGCGTGCCCAAGAA
GGTGCTGCAGTTCGCCGGCATTGAGGATGTCTTCACCTCGTCCCGTGGATCCACCAAGACCCTTGGCAACTTCGTCAAGG
CCACCTTTGACTGCCTGATGAAGACTTATGGATTCCTTACTCCTGACTTCTGGAGGGACACCAAGTTCGTCAAGTCTCCA
TTCCAGGAGTACACCGACCTCTTGGCCAAGCCGACTAAGGCTCTTATGATTGATGCACCTGTCGAGAACGTAGAGGCTTA
GGATGGCGGAGTAAAGAGAGTCTTTGCTAGCTCGGACTTGTCTGATGCACTTTGTTTTACAATAGTTAAGAACCGGTTGT
CATCCTTGGATTGTGCTGCGTCTGGATGTTTCTATTTCCTGTCAAGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis