Browse Element(s) Details


OsAffx.25767.1.S1_s_at

Description tigr:9631.m05846
TID=OsAffx.25767.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5938010/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59330OsAffx.25765.1.S1_at11/113+33716444..33719478Polygalacturonase family protein, expressed
LOC_Os03g59340Os.14979.1.S1_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59340Os.14979.1.S2_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59350OsAffx.13550.1.S1_s_at11/113+33726843..33728494UDP-glucose:flavonoid-O-glucosyltransferase, putative, expressed
LOC_Os03g59360Os.10572.1.S1_at11/113+33729890..33731707Remorin, C-terminal region family protein, expressed
LOC_Os03g59370OsAffx.25766.1.S1_at11/113+33735723..33736800Ubiquitin family protein
LOC_Os03g59380OsAffx.25767.1.S1_s_at10/113+33737883..33738699Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g59390Os.5004.1.S1_at10/113+33744763..33749033Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os03g59400OsAffx.13551.1.S1_at10/113+33750953..33751357hypothetical protein
LOC_Os03g59410NANA3+33756437..33762591retrotransposon protein, putative, unclassified
LOC_Os03g59420NANA3+33763220..33766510retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005618cellular_componentcell wall
GO:0005319molecular_functionlipid transporter activity
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25767.1.S1_s_at--770--2811NONE
AAGATATCCTAAGTGGCAGCGGCGG
NONE
OsAffx.25767.1.S1_s_at--175--1871Chr03:33738427..33738451 (25 bp)
ACGACGCCGCTACATGGCGTGAGTT
LOC_Os03g59380
OsAffx.25767.1.S1_s_at--1022--9871Chr03:33738437..33738461 (25 bp)
TACATGGCGTGAGTTCGTCGCGATC
LOC_Os03g59380
OsAffx.25767.1.S1_s_at--211--6071Chr03:33738447..33738471 (25 bp)
GAGTTCGTCGCGATCGGTGCATGAT
LOC_Os03g59380
OsAffx.25767.1.S1_s_at--30--531Chr03:33738470..33738494 (25 bp)
ATCGAACATGCATGGTGTTGACGCG
LOC_Os03g59380
OsAffx.25767.1.S1_s_at--1095--5351Chr03:33738498..33738522 (25 bp)
GAAGAGTGATTTGGCTTTTGCGCAT
LOC_Os03g59380
OsAffx.25767.1.S1_s_at--147--10871Chr03:33738508..33738532 (25 bp)
TTGGCTTTTGCGCATGGTGTAATCT
LOC_Os03g59380
OsAffx.25767.1.S1_s_at--838--9151Chr03:33738516..33738540 (25 bp)
TGCGCATGGTGTAATCTGATCTGAT
LOC_Os03g59380
OsAffx.25767.1.S1_s_at--1020--9471Chr03:33738530..33738554 (25 bp)
TCTGATCTGATCTAATCCGTGCATG
LOC_Os03g59380
OsAffx.25767.1.S1_s_at--862--551Chr03:33738544..33738568 (25 bp)
ATCCGTGCATGAATAAGTACTAGAC
LOC_Os03g59380
OsAffx.25767.1.S1_s_at--308--7011Chr03:33738560..33738584 (25 bp)
GTACTAGACATGCTTGTAATAACTC
LOC_Os03g59380
Target Sequence 
AAGATATCCTAAGTGGCAGCGGCGGCGACGACGACGCCGCTACATGGCGTGAGTTCGTCGCGATCGGTGCATGATCGAAC
ATGCATGGTGTTGACGCGGGAGAAGAGTGATTTGGCTTTTGCGCATGGTGTAATCTGATCTGATCTAATCCGTGCATGAA
TAAGTACTAGACATGCTTGTAATAACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25767.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis