Browse Element(s) Details


OsAffx.25778.1.S1_x_at

Description tigr:9638.m01505
TID=OsAffx.25778.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g010301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g151101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01010NANA4+1061..1836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01020NANA4+8705..8977hypothetical protein
LOC_Os04g01030Os.27691.1.S1_x_at3/114+9980..20912retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01030OsAffx.30013.5.S1_x_at3/114+9980..20912retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01030Os.56292.1.S1_x_at2/114+9980..20912retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01030Os.27691.2.S1_x_at1/114+9980..20912retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01030Os.56292.1.S1_at1/114+9980..20912retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01030OsAffx.20390.1.S1_x_at1/114+9980..20912retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01030OsAffx.25778.1.S1_at1/114+9980..20912retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01030OsAffx.25778.1.S1_x_at1/114+9980..20912retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01040NANA4+22177..28840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01050NANA4+31092..31774retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01060Os.14491.2.S1_x_at4/114+36079..45522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g01060Os.47463.1.S1_x_at4/114+36079..45522transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25778.1.S1_x_at--89--9212Chr10:8868996..8869020 (25 bp)
TCCACCGAAGATCGCCGGAAAGTCG
NONE
OsAffx.25778.1.S1_x_at--518--9411Chr10:8868974..8868998 (25 bp)
TCGTCGCCTTCGTTGACCAGAACCT
NONE
OsAffx.25778.1.S1_x_at--378--9291Chr10:8868908..8868932 (25 bp)
TCCGTCGTCGCATAAGTGTTGGTAA
NONE
OsAffx.25778.1.S1_x_at--1047--97524Chr12:14193602..14193625 (24 bp)
TAAGTGTTGGTAAGAATCGCCGTCA
NONE
OsAffx.25778.1.S1_x_at--1102--6614Chr05:8972002..8972026 (25 bp)
GTTGGTAAGAATCGCCGTCACCTTC
NONE
OsAffx.25778.1.S1_x_at--386--7791Chr10:8868856..8868880 (25 bp)
GGTGCCCTCCATTTGCGTTATTGTG
NONE
OsAffx.25778.1.S1_x_at--249--3591Chr10:8868847..8868871 (25 bp)
CATTTGCGTTATTGTGCCGTGGTTC
NONE
OsAffx.25778.1.S1_x_at--465--7511Chr10:8868829..8868853 (25 bp)
GTGGTTCGCCGGTAACCGCTCCCAT
NONE
OsAffx.25778.1.S1_x_at--398--4031Chr10:8868367..8868826 (25 bp)
CGTTCACCGCCGTGTGACGCTTAAA
NONE
OsAffx.25778.1.S1_x_at--786--1791Chr10:8868362..8868383 (22 bp)
ACCGCCGTGTGACGCTTAAACCTAG
NONE
OsAffx.25778.1.S1_x_at--919--4111Chr10:8868360..8868383 (24 bp)
CGCCGTGTGACGCTTAAACCTAGCC
NONE
Target Sequence 
TCCACCGAAGATCGCCGGAAAGTCGTCGCCTTCGTTGACCAGAACCTCGCCGCCCTTCGGAGCTCATCGCCGGTCATCTC
CTTCGCTGTCCGTCGTCGCATAAGTGTTGGTAAGAATCGCCGTCACCTTCTCTACCTCCCGGTGCCCTCCATTTGCGTTA
TTGTGCCGTGGTTCGCCGGTAACCGCTCCCATGCCGTTCACCGCCGTGTGACGCTTAAACCTAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25778.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis