Browse Element(s) Details


OsAffx.25840.1.S1_at

Description tigr:9632.m00161
TID=OsAffx.25840.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0256011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02530Os.27102.1.S1_x_at11/114+924992..927884expressed protein
LOC_Os04g02530Os.46444.1.S1_x_at1/114+924992..927884expressed protein
LOC_Os04g02539NANA4+928966..929187NA
LOC_Os04g02550Os.54925.1.S1_at11/114+931724..933844expressed protein
LOC_Os04g02560OsAffx.25840.1.S1_at11/114+946556..947133expressed protein
LOC_Os04g02570OsAffx.25841.1.S1_at11/114+954235..954648hypothetical protein
LOC_Os04g02580Os.52079.1.S1_at11/114+955074..956771expressed protein
LOC_Os04g02590OsAffx.13623.1.S1_at11/114+958618..959001hypothetical protein
LOC_Os04g02600OsAffx.15220.2.S1_s_at5/114+961396..966134retrotransposon protein, putative, LINE subclass
LOC_Os04g02600OsAffx.15220.1.S1_s_at4/114+961396..966134retrotransposon protein, putative, LINE subclass
LOC_Os04g02600Os.13877.1.S1_at1/114+961396..966134retrotransposon protein, putative, LINE subclass
LOC_Os04g02610NANA4+967480..967680hypothetical protein
LOC_Os04g02620Os.27281.1.S1_at11/114+971635..974161oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25840.1.S1_at--51--7891Chr04:947075..947099 (25 bp)
GGTTCTTGGCCGAGCCGCTCAAGGC
LOC_Os04g02560
OsAffx.25840.1.S1_at--724--9731Chr04:947057..947081 (25 bp)
TCAAGGCGACCACGGTGACATGCAT
LOC_Os04g02560
OsAffx.25840.1.S1_at--608--5851Chr04:947050..947074 (25 bp)
GACCACGGTGACATGCATCCCAAGG
LOC_Os04g02560
OsAffx.25840.1.S1_at--684--9411Chr04:946947..946971 (25 bp)
TCGTCGTCCGTGCTGGACCGTGTCC
LOC_Os04g02560
OsAffx.25840.1.S1_at--869--3931Chr04:946754..946778 (25 bp)
CGGCGTACGCCGACTCATACCGGAG
LOC_Os04g02560
OsAffx.25840.1.S1_at--495--7231Chr04:946657..946681 (25 bp)
GTCGCCCGCCGTGGGAGTAATGAAC
LOC_Os04g02560
OsAffx.25840.1.S1_at--320--7652Chr02:3483561..3483926 (25 bp)
GGGAGTAATGAACTCGCCGTCACCT
NONE
OsAffx.25840.1.S1_at--683--671Chr04:946638..946662 (25 bp)
ATGAACTCGCCGTCACCTTTGCATG
LOC_Os04g02560
OsAffx.25840.1.S1_at--343--4311Chr04:946623..946647 (25 bp)
CCTTTGCATGCATGTGCCATGTGAT
LOC_Os04g02560
OsAffx.25840.1.S1_at--1060--7271Chr04:946610..946634 (25 bp)
GTGCCATGTGATTCAAAGTACTATC
LOC_Os04g02560
OsAffx.25840.1.S1_at--601--7011Chr04:946593..946617 (25 bp)
GTACTATCAGTGTTAGCTGTACATA
LOC_Os04g02560
Target Sequence 
GGTTCTTGGCCGAGCCGCTCAAGGCGACCACGGTGACATGCATCCCAAGGCTGCGCGGCGGCGGCGGTGGCGGCGCGAGG
CGGCATCGCCGCGCTGCTTCCTCCGGCGGCGGCGCGGCGCCGCCGGTGTCGTCGTCCGTGCTGGACCGTGTCCGGGACGT
CGTGCTGAGGCTGGCGATGCTGTCGGCCGCGTCGACGACGACGAAGCAGGGCGCCCTGCCGCCGCAGCAGCAGACGGCGA
CGCCGATCAGGACGTCGCCGGGCAGGTCGGCAGCGGCGACGTCGAGACGCTCCGCGGCGGTGCGGATGAGCCCGGCGGCG
CCGGCGTACGCCGACTCATACCGGAGCGAGGCGGTCGACGAGTGCATCGAGTTCTTGAAGAGGTCGGCTGCCGGCGTCGG
CGTCGGTGGCGCGCCGGCGTCGCCCGCCGTGGGAGTAATGAACTCGCCGTCACCTTTGCATGCATGTGCCATGTGATTCA
AAGTACTATCAGTGTTAGCTGTACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis