Browse Element(s) Details


OsAffx.25903.5.S1_at

Description tigr:9632.m00617
TID=OsAffx.25903.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0704011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g07050OsAffx.13702.1.S1_at11/114+3692186..3694559hypothetical protein
LOC_Os04g07050OsAffx.13703.1.S1_x_at1/114+3692186..3694559hypothetical protein
LOC_Os04g07040OsAffx.25903.5.S1_at11/114+3711386..3712216hypothetical protein
LOC_Os04g07040OsAffx.25903.5.S1_s_at11/114+3711386..3712216hypothetical protein
LOC_Os04g07030OsAffx.21897.5.S1_x_at6/114+3714039..3717020retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07020Os.10703.2.S1_x_at1/114+3717333..3723443retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07010OsAffx.25903.4.S1_at10/114+3724043..3726226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07010OsAffx.25903.3.S1_at1/114+3724043..3726226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07010Os.46459.1.S1_at1/114+3724043..3726226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g07000NANA4+3728641..3730725retrotransposon protein, putative, unclassified
LOC_Os04g07080NANA4+3733890..3734646retrotransposon protein, putative, unclassified
LOC_Os04g07070NANA4+3736184..3737617retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25903.5.S1_at--718--9691Chr04:3711997..3712021 (25 bp)
TCACTCCTTGTTCCATGTCTGCAAG
LOC_Os04g07040
OsAffx.25903.5.S1_at--259--3331Chr04:3711998..3712022 (25 bp)
CACTCCTTGTTCCATGTCTGCAAGC
LOC_Os04g07040
OsAffx.25903.5.S1_at--494--1991Chr04:3711999..3712023 (25 bp)
ACTCCTTGTTCCATGTCTGCAAGCG
LOC_Os04g07040
OsAffx.25903.5.S1_at--809--3811Chr04:3712000..3712024 (25 bp)
CTCCTTGTTCCATGTCTGCAAGCGT
LOC_Os04g07040
OsAffx.25903.5.S1_at--976--9231Chr04:3712001..3712025 (25 bp)
TCCTTGTTCCATGTCTGCAAGCGTG
LOC_Os04g07040
OsAffx.25903.5.S1_at--945--4311Chr04:3712002..3712026 (25 bp)
CCTTGTTCCATGTCTGCAAGCGTGG
LOC_Os04g07040
OsAffx.25903.5.S1_at--125--3631Chr04:3712003..3712027 (25 bp)
CTTGTTCCATGTCTGCAAGCGTGGG
LOC_Os04g07040
OsAffx.25903.5.S1_at--1072--10771Chr04:3712004..3712028 (25 bp)
TTGTTCCATGTCTGCAAGCGTGGGA
LOC_Os04g07040
OsAffx.25903.5.S1_at--522--3511Chr04:3712126..3712150 (25 bp)
CATGTGGACAGTGATCACTGGTGGA
LOC_Os04g07040
OsAffx.25903.5.S1_at--307--791Chr04:3712127..3712151 (25 bp)
ATGTGGACAGTGATCACTGGTGGAG
LOC_Os04g07040
OsAffx.25903.5.S1_at--873--7511Chr04:3712129..3712153 (25 bp)
GTGGACAGTGATCACTGGTGGAGAA
LOC_Os04g07040
Target Sequence 
TCACTCCTTGTTCCATGTCTGCAAGCGTGGGATAGTTGATTCTGTGATCATCAATGATGATGATGATTCAGATAATCCTG
ACAGTAAAGTAATTGGGGACCTTCTTATGCAAGATAAAGATCACAAGAGCATGTGGACAGTGATCACTGGTGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25903.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis