Browse Element(s) Details


OsAffx.13702.1.S1_at

Description tigr:9632.m00618
TID=OsAffx.13702.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0705011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06980OsAffx.22947.2.S1_x_at3/114+3665832..3668308retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06980OsAffx.22947.3.S1_x_at2/114+3665832..3668308retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06990OsAffx.25902.1.S1_at11/114+3669264..3671306hypothetical protein
LOC_Os04g07060NANA4+3678811..3685533retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07050OsAffx.13702.1.S1_at11/114+3692186..3694559hypothetical protein
LOC_Os04g07050OsAffx.13703.1.S1_x_at1/114+3692186..3694559hypothetical protein
LOC_Os04g07040OsAffx.25903.5.S1_at11/114+3711386..3712216hypothetical protein
LOC_Os04g07040OsAffx.25903.5.S1_s_at11/114+3711386..3712216hypothetical protein
LOC_Os04g07030OsAffx.21897.5.S1_x_at6/114+3714039..3717020retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g07020Os.10703.2.S1_x_at1/114+3717333..3723443retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13702.1.S1_at--193--2091Chr04:3693928..3693952 (25 bp)
ACATACCAACATGTAGCGGAGAAGA
LOC_Os04g07050
OsAffx.13702.1.S1_at--54--451Chr04:3694023..3694044 (22 bp)
ATCTTTGGAGTCTGGCTCAAGGCTC
LOC_Os04g07050
OsAffx.13702.1.S1_at--1089--1131Chr04:3694031..3694141 (25 bp)
AGTCTGGCTCAAGGCTCAAGATGGA
LOC_Os04g07050
OsAffx.13702.1.S1_at--840--2791Chr04:3694134..3694158 (25 bp)
AAGATGGAATCGATTGCAGTGGCCC
LOC_Os04g07050
OsAffx.13702.1.S1_at--960--5251Chr04:3694140..3694164 (25 bp)
GAATCGATTGCAGTGGCCCATAGGA
LOC_Os04g07050
OsAffx.13702.1.S1_at--238--8471Chr04:3694153..3694177 (25 bp)
TGGCCCATAGGAAAGAGGCAGCTGC
LOC_Os04g07050
OsAffx.13702.1.S1_at--320--6191Chr04:3694242..3694266 (25 bp)
GAGGAAATACCGACTACCATGGATT
LOC_Os04g07050
OsAffx.13702.1.S1_at--634--311Chr04:3694248..3694272 (25 bp)
ATACCGACTACCATGGATTTGATGA
LOC_Os04g07050
OsAffx.13702.1.S1_at--360--231Chr04:3694288..3694312 (25 bp)
ATATTCAGTTGGAGGTCTTGACAGC
LOC_Os04g07050
OsAffx.13702.1.S1_at--377--7131Chr04:3694302..3694326 (25 bp)
GTCTTGACAGCAGCGCATCAACATA
LOC_Os04g07050
OsAffx.13702.1.S1_at--405--1651Chr04:3694313..3694337 (25 bp)
AGCGCATCAACATAGCTCGTGTGAA
LOC_Os04g07050
Target Sequence 
ACATACCAACATGTAGCGGAGAAGAAAATTAAGGATAAGGTGGAAGAATTGAGGGTCCTTGGGGTCCAAAAGGCAGAAAT
GGATGCGAGGGCCGCATCTTTGGAGTCTGGCTCAAGGCTCAAGATGGAATCGATTGCAGTGGCCCATAGGAAAGAGGCAG
CTGCAAATGCATTTGATGCTGAGAAGGCAGAAACTATGAAAGAATTGGAAGACCATAAGATGGATGTGGAGGAAATACCG
ACTACCATGGATTTGATGAAGGGTGAAAATGATAATATTCAGTTGGAGGTCTTGACAGCAGCGCATCAACATAGCTCGTG
TGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis