Browse Element(s) Details


OsAffx.25982.3.S1_at

Description tigr:9632.m01047
TID=OsAffx.25982.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AHM2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1173010/11hypothetical protein
LOC_Os04g115301/11Methyl-CpG binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11670OsAffx.13777.1.S1_at11/114+6381228..6382217hypothetical protein
LOC_Os04g11680NANA4+6388809..6392130hypothetical protein
LOC_Os04g11690NANA4+6392947..6394740retrotransposon protein, putative, unclassified
LOC_Os04g11700NANA4+6396196..6397999retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11710NANA4+6398425..6399290retrotransposon protein, putative, unclassified
LOC_Os04g11720OsAffx.8916.1.S1_x_at2/114+6400547..6403454retrotransposon protein, putative, unclassified
LOC_Os04g11720OsAffx.13772.1.S1_at1/114+6400547..6403454retrotransposon protein, putative, unclassified
LOC_Os04g11730OsAffx.25982.3.S1_at10/114+6404815..6409299hypothetical protein
LOC_Os04g11750NANA4+6417649..6420429hypothetical protein
LOC_Os04g11760OsAffx.13780.1.S1_at11/114+6421995..6422315Resistance protein, putative
LOC_Os04g11770OsAffx.19542.3.S1_x_at8/114+6423431..6427653retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g11780OsAffx.3768.1.S1_at11/114+6428565..6432301resistance protein LR10, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25982.3.S1_at--1155--1711Chr04:6407446..6407470 (25 bp)
ACCAGCTGCGTACACGATCATCGAA
LOC_Os04g11730
OsAffx.25982.3.S1_at--333--3291NONE
CAAAGTTCATCTAGCGTCCTCGTGG
NONE
OsAffx.25982.3.S1_at--1052--4531Chr04:6408794..6408818 (25 bp)
GCCCAGTGCGGCAACTTTAGCAAGG
LOC_Os04g11730
OsAffx.25982.3.S1_at--586--10271Chr04:6408825..6408849 (25 bp)
TTTGCTTGCTGGATGACCGCCTTGT
LOC_Os04g11730
OsAffx.25982.3.S1_at--842--3591Chr04:6408876..6408900 (25 bp)
CATTGTTCACGAGGGCAGCGAGTCT
LOC_Os04g11730
OsAffx.25982.3.S1_at--913--2331Chr04:6409164..6409188 (25 bp)
AAAGATGTCTCTTGACTCCGTTGAT
LOC_Os04g11730
OsAffx.25982.3.S1_at--20--10772Chr04:6409175..6409199 (25 bp)
TTGACTCCGTTGATTGCAGCAGTAT
LOC_Os04g11730
OsAffx.25982.3.S1_at--558--5051Chr04:6409190..6409214 (25 bp)
GCAGCAGTATCTGTGTTAGGTCCTC
LOC_Os04g11730
OsAffx.25982.3.S1_at--197--10092Chr04:6409206..6409230 (25 bp)
TAGGTCCTCCATTCAGGTTGAACGC
LOC_Os04g11730
OsAffx.25982.3.S1_at--731--7891Chr04:6409221..6409245 (25 bp)
GGTTGAACGCAGTCTGGCCATGCAG
LOC_Os04g11730
OsAffx.25982.3.S1_at--414--5051Chr04:6409242..6409266 (25 bp)
GCAGCCTTTGTCGTTAGGTTCACAG
LOC_Os04g11730
Target Sequence 
ACCAGCTGCGTACACGATCATCGAAACTCCAAAAGCTATCACTGAAAGAAGGGATACTTAGTGATGACCAAAGTTCATCT
AGCGTCCTCGTGGCGATGGTTGCCCAGTGCGGCAACTTTAGCAAGGTTGTGGTTTGCTTGCTGGATGACCGCCTTGTCTG
GTGGCTTGGTTGGCGGCAGTGGCCATTGTTCACGAGGGCAGCGAGTCTAGACAAGCTAGAAATCCATGTTGTCGGTCTAG
TAAGGCAGAAGTTTACTAACCACCATCCTACGGCTTTCAGGATTAAGGTTGGCTGGAGATCAAAGATGTCTCTTGACTCC
GTTGATTGCAGCAGTATCTGTGTTAGGTCCTCCATTCAGGTTGAACGCAGTCTGGCCATGCAGCCTTTGTCGTTAGGTTC
ACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25982.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis