Browse Element(s) Details


OsAffx.26022.1.S1_at

Description tigr:9632.m01239
TID=OsAffx.26022.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1364011/11Protein kinase domain containing protein
LOC_Os04g145609/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g13600OsAffx.25936.1.S1_s_at9/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13600OsAffx.25936.7.S1_s_at7/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13600OsAffx.25936.2.S1_x_at5/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13600OsAffx.25936.5.S1_x_at2/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13610NANA4+7581201..7581815hypothetical protein
LOC_Os04g13620Os.10827.1.S1_x_at7/114+7582424..7585714transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13620Os.46055.2.S1_x_at5/114+7582424..7585714transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13630Os.47463.1.S1_x_at5/114+7586016..7599129transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13630Os.14491.2.S1_x_at4/114+7586016..7599129transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13640OsAffx.26022.1.S1_at11/114+7600154..7601225Protein kinase domain containing protein
LOC_Os04g13650OsAffx.3761.1.S1_x_at2/114+7603827..7606808hypothetical protein
LOC_Os04g13650OsAffx.18086.1.S1_x_at1/114+7603827..7606808hypothetical protein
LOC_Os04g13660NANA4+7608239..7608967hypothetical protein
LOC_Os04g13670NANA4+7609661..7610851retrotransposon protein, putative, unclassified
LOC_Os04g13680NANA4+7613109..7615003retrotransposon protein, putative, unclassified
LOC_Os04g13690NANA4+7616424..7619181retrotransposon protein, putative, unclassified
LOC_Os04g13700NANA4+7621402..7626329retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009598biological_processdetection of pathogenic bacteria
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26022.1.S1_at--430--6012Chr04:8144953..8144977 (25 bp)
GAGAGCAACTGGGATTCCTTCAGAG
LOC_Os04g14560
OsAffx.26022.1.S1_at--13--8052Chr04:8144895..8144919 (25 bp)
GGAGTATCTTCACTATCATCACTGT
LOC_Os04g14560
OsAffx.26022.1.S1_at--1151--1012Chr04:8144869..8144893 (25 bp)
AGGTAGTCCTACACTGCGACTTGAA
LOC_Os04g14560
OsAffx.26022.1.S1_at--49--5672Chr04:8144819..8144843 (25 bp)
GACATGGTTGCATTGGTGGCCGATT
LOC_Os04g14560
OsAffx.26022.1.S1_at--132--8372Chr04:8144802..8144826 (25 bp)
GGCCGATTTCGGGATTGCAAAACTG
LOC_Os04g14560
OsAffx.26022.1.S1_at--74--5791Chr04:7600625..7600649 (25 bp)
GACGACAACTCTGTTATTTCTGCAA
LOC_Os04g13640
OsAffx.26022.1.S1_at--20--4632Chr04:8144583..8144607 (25 bp)
GCGATGCATTCAGCTACGGTATTAT
LOC_Os04g14560
OsAffx.26022.1.S1_at--929--612Chr04:8144560..8144584 (25 bp)
ATGCTTCTGGAGTTATTCACTGGAA
LOC_Os04g14560
OsAffx.26022.1.S1_at--460--2332Chr04:8144537..8144561 (25 bp)
AAAGAGGCCAACTGATCCCATGTTT
LOC_Os04g14560
OsAffx.26022.1.S1_at--941--7672Chr04:8144487..8144511 (25 bp)
GGGTTACTAGTGCATTTCCATCAAA
LOC_Os04g14560
OsAffx.26022.1.S1_at--675--3431Chr04:7600294..7600318 (25 bp)
CAGTTACTGGTGCAAGATTCTTCTA
LOC_Os04g13640
Target Sequence 
GAGAGCAACTGGGATTCCTTCAGAGACTGGACATTCTGTTGGATGTGTCTATGGCAATGGAGTATCTTCACTATCATCAC
TGTGAGGTAGTCCTACACTGCGACTTGAAGCCTAGCAATGTCCTATTCGACCAAGACATGGTTGCATTGGTGGCCGATTT
CGGGATTGCAAAACTGTTATGTGGTGACGACAACTCTGTTATTTCTGCAAGTATGCCTGGAACAGTTGGTTATATGGCAC
CAGAGTATGGGTCAGTTGGGAAAGCATCACGGAAAAGCGATGCATTCAGCTACGGTATTATGCTTCTGGAGTTATTCACT
GGAAAGAGGCCAACTGATCCCATGTTTGTTGGAGAACTATCTCTAAGGCAGTGGGTTACTAGTGCATTTCCATCAAATGT
CATGGATGTGGTGGATAACCAGTTACTGGTGCAAGATTCTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis