Browse Element(s) Details


OsAffx.2605.1.S1_at

Description tigr:9630.m01296
TID=OsAffx.2605.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=P21-ARC (ARP23 complex 21 kDa subunit)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1400011/11P21-ARC family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13970Os.26931.1.S1_a_at11/112+7621905..7627260UOS1, putative, expressed
LOC_Os02g13980Os.51291.1.S1_at10/112+7627395..7628246expressed protein
LOC_Os02g13990Os.11097.1.S1_at11/112+7630870..7635230U2 small nuclear ribonucleoprotein A, putative, expressed
LOC_Os02g14000Os.10246.1.S1_at11/112+7643704..7646133P21-ARC family protein, expressed
LOC_Os02g14000OsAffx.2605.1.S1_at11/112+7643704..7646133P21-ARC family protein, expressed
LOC_Os02g14010OsAffx.24239.1.S1_at10/112+7648303..7649327hypothetical protein
LOC_Os02g14020NANA2+7650388..7655631hypothetical protein
LOC_Os02g14030OsAffx.24240.1.S1_at11/112+7658701..7659433hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007015biological_processactin filament organization
GO:0005885cellular_componentArp2/3 protein complex
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2605.1.S1_at--609--5611Chr02:7644600..7644624 (25 bp)
GACAAGTTACTGATCTATCTGACAT
LOC_Os02g14000
OsAffx.2605.1.S1_at--406--5671Chr02:7644620..7644644 (25 bp)
GACATTTTACATCAATATTGCCCTG
LOC_Os02g14000
OsAffx.2605.1.S1_at--354--5311Chr02:7644654..7644678 (25 bp)
GAAGGTTGCCGAACACTGGCTGTTG
LOC_Os02g14000
OsAffx.2605.1.S1_at--403--6871Chr02:7644703..7644727 (25 bp)
GTTTGGAGAAAGTTCCTGTGCCTGG
LOC_Os02g14000
OsAffx.2605.1.S1_at--1141--10511Chr02:7644756..7644780 (25 bp)
TTCACTCTACCCCAATCTCAGGAGG
LOC_Os02g14000
OsAffx.2605.1.S1_at--120--1031Chr02:7644785..7644809 (25 bp)
AGGTATATGACTTCATCCGCCACTA
LOC_Os02g14000
OsAffx.2605.1.S1_at--604--551Chr02:7644799..7644823 (25 bp)
ATCCGCCACTACCACATTTGTGTGC
LOC_Os02g14000
OsAffx.2605.1.S1_at--417--4031Chr02:7644864..7644888 (25 bp)
CGTTTTGGACAAGAGCACGCTTTCC
LOC_Os02g14000
OsAffx.2605.1.S1_at--286--5851Chr02:7644876..7644900 (25 bp)
GAGCACGCTTTCCAAAAAACAACTT
LOC_Os02g14000
OsAffx.2605.1.S1_at--544--7651Chr02:7645079..7645103 (25 bp)
GGGAGTAGTTTCTCAACTGTGTGAA
LOC_Os02g14000
OsAffx.2605.1.S1_at--1097--2332Chr02:7645131..7645155 (25 bp)
AAAGCTTGCCTTATTTCTCGAATAG
LOC_Os02g14000
Target Sequence 
GACAAGTTACTGATCTATCTGACATTTTACATCAATATTGCCCTGAAAAGGCTGGAAGGTTGCCGAACACTGGCTGTTGG
GACAAAGGCAATCATTAATCTGGGTTTGGAGAAAGTTCCTGTGCCTGGGGAACCAGGGTTTCCCTTCCCTGGTCTTTTCA
CTCTACCCCAATCTCAGGAGGAAGCAGGTATATGACTTCATCCGCCACTACCACATTTGTGTGCTTGTATTCTCTTTTAC
TCCCTCCGGGTTGATAATACTTGTCGTTTTGGACAAGAGCACGCTTTCCAAAAAACAACTTTGGCCATTATTTTTAATTA
TAATATGTATAAAGGTGTTAACAAATATATGATTTTATTAAAGTACTTTTTAAGACTAATCTATACATGTAGTCACCATA
TTTTAAAAATGATTCATAATCAAAGATTCTAAAATTTGACCTCACCCTTGTCTAAAACGATAAGTATTATCAGTCCGAAG
GGAGTAGTTTCTCAACTGTGTGAAATCATTGTTGCTTTTTATTCCTAGAGAAAAGCTTGCCTTATTTCTCGAATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis