Browse Element(s) Details


OsAffx.26050.28.S1_s_at

Description tigr:9634.m02123
TID=OsAffx.26050.28
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3403011/11hypothetical protein
LOC_Os06g2168011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34010OsAffx.32248.1.S1_x_at11/1112+20503661..20505169Cytochrome c biosynthesis ccmC-like mitochondrial protein, putative
LOC_Os12g34010OsAffx.32247.1.S1_x_at11/1112+20503661..20505169Cytochrome c biosynthesis ccmC-like mitochondrial protein, putative
LOC_Os12g34019NANA12+20508109..20508631NA
LOC_Os12g34030OsAffx.26050.28.S1_s_at11/1112+20516325..20517516hypothetical protein
LOC_Os12g34040OsAffx.32344.1.S1_at5/1112+20517912..20519016retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g34050NANA12+20532542..20533825retrotransposon protein, putative, unclassified
LOC_Os12g34060OsAffx.19957.1.S1_at8/1112+20540298..20542028hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
GO:0004523molecular_functionribonuclease H activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26050.28.S1_s_at--559--3092Chr12:20516626..20516650 (25 bp)
AATACAAACCAATGGGATGTGGAGA
LOC_Os12g34030
OsAffx.26050.28.S1_s_at--207--6352Chr12:20516677..20516701 (25 bp)
GATGCGGCTGCTATTCTGAACATGC
LOC_Os12g34030
OsAffx.26050.28.S1_s_at--719--4872Chr12:20516686..20516710 (25 bp)
GCTATTCTGAACATGCCAAGGCCGA
LOC_Os12g34030
OsAffx.26050.28.S1_s_at--447--3532Chr12:20516697..20516721 (25 bp)
CATGCCAAGGCCGAGAACAGAGCAA
LOC_Os12g34030
OsAffx.26050.28.S1_s_at--48--10772Chr12:20517068..20517092 (25 bp)
TTGATCTCAAGATGCCACGGTTAAA
LOC_Os12g34030
OsAffx.26050.28.S1_s_at--90--1912Chr12:20517084..20517108 (25 bp)
ACGGTTAAACCCAGCTACATGGTCG
LOC_Os12g34030
OsAffx.26050.28.S1_s_at--1078--5032Chr12:20517124..20517148 (25 bp)
GCAGATATCATGAGCAAACGGGAGG
LOC_Os12g34030
OsAffx.26050.28.S1_s_at--224--8012Chr12:20517144..20517168 (25 bp)
GGAGGCGGCAATTGCAGTCTCTGTA
LOC_Os12g34030
OsAffx.26050.28.S1_s_at--435--5032Chr12:20517157..20517181 (25 bp)
GCAGTCTCTGTAATGTGGACCATCT
LOC_Os12g34030
OsAffx.26050.28.S1_s_at--788--5532Chr12:20517191..20517215 (25 bp)
GAAACAGCTACAACCATGGCGATGT
LOC_Os12g34030
OsAffx.26050.28.S1_s_at--116--975Chr12:20517287..20517311 (25 bp)
AGGACCCATCGGCTGTGGTTCAGAA
LOC_Os12g34030
Target Sequence 
AATACAAACCAATGGGATGTGGAGAAGGTGCAGCGGATTTTCCTTCCATTGGATGCGGCTGCTATTCTGAACATGCCAAG
GCCGAGAACAGAGCAAGATGAATTTTGGGCTTGGGCATGGGACAAAACGAGCATATTTACGGATCTTTTTGATCTCAAGA
TGCCACGGTTAAACCCAGCTACATGGTCGTGGGACGTGTTGGATGCAGATATCATGAGCAAACGGGAGGCGGCAATTGCA
GTCTCTGTAATGTGGACCATCTGGGGGAGCCGAAACAGCTACAACCATGGCGATGTCAAGTACCAGTCGTTAAGGTCTGT
TGAATTGGTTGATGAGCTCATTAAATCTCTGGAGATTCCATCTCAGGAGGACCCATCGGCTGTGGTTCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26050.28.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis