Browse Element(s) Details


OsAffx.2612.1.S1_at

Description tigr:9630.m01398
TID=OsAffx.2612.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sodiumcalcium exchanger protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1498011/11Sodium/calcium exchanger protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14929Os.54112.1.S1_at11/112+8326129..8343174T-complex protein 1, gamma subunit, putative, expressed
LOC_Os02g14929OsAffx.27518.3.S1_x_at4/112+8326129..8343174T-complex protein 1, gamma subunit, putative, expressed
LOC_Os02g14929OsAffx.22180.1.S1_at1/112+8326129..8343174T-complex protein 1, gamma subunit, putative, expressed
LOC_Os02g14948NANA2+8348912..8349208NA
LOC_Os02g14970OsAffx.12044.1.S1_at11/112+8350305..8352194expressed protein
LOC_Os02g14980OsAffx.2612.1.S1_at11/112+8358863..8362413Sodium/calcium exchanger protein, expressed
LOC_Os02g14980OsAffx.15454.1.S1_x_at1/112+8358863..8362413Sodium/calcium exchanger protein, expressed
LOC_Os02g14990NANA2+8363274..8363903Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15000NANA2+8367352..8367987Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15010OsAffx.12046.1.S1_at11/112+8375342..8375983Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15020NANA2+8380540..8381109Zinc finger, C3HC4 type family protein
LOC_Os02g15030OsAffx.24263.1.S1_at11/112+8385914..8386709hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2612.1.S1_at--1135--8951Chr02:8361662..8361686 (25 bp)
TGAACAAACCGGTCTGCTCGACAAG
LOC_Os02g14980
OsAffx.2612.1.S1_at--1039--10471Chr02:8361733..8361757 (25 bp)
TTAAGGCCATCTTACTTTTGCTTCT
LOC_Os02g14980
OsAffx.2612.1.S1_at--109--1291Chr02:8361785..8361809 (25 bp)
AGATCCTCTTGTTGATGCTGTGCAC
LOC_Os02g14980
OsAffx.2612.1.S1_at--248--2291Chr02:8361818..8361842 (25 bp)
AAATGCTACACATATTCCCTCCTTT
LOC_Os02g14980
OsAffx.2612.1.S1_at--237--451Chr02:8361846..8361870 (25 bp)
ATCTCCTTCATTGTAATGCCCTTGG
LOC_Os02g14980
OsAffx.2612.1.S1_at--445--8491Chr02:8361868..8361892 (25 bp)
TGGCTACTAATTCCAGCGAGGCTGT
LOC_Os02g14980
OsAffx.2612.1.S1_at--152--2051Chr02:8361930..8361954 (25 bp)
ACTTTGTCACTAACCTTCTCTGAGG
LOC_Os02g14980
OsAffx.2612.1.S1_at--210--7411Chr02:8362207..8362231 (25 bp)
GTGTTCTTGGCCCTTGTTTACGTGA
LOC_Os02g14980
OsAffx.2612.1.S1_at--521--7451Chr02:8362279..8362303 (25 bp)
GTGTGCATCATAATGGGCCTCTTCA
LOC_Os02g14980
OsAffx.2612.1.S1_at--791--8111Chr02:8362313..8362337 (25 bp)
GGACTGATTTCCCACTCTGGACATG
LOC_Os02g14980
OsAffx.2612.1.S1_at--77--1811Chr02:8362358..8362382 (25 bp)
ACCCGTTGTCGCTGATCATGGTCTA
LOC_Os02g14980
Target Sequence 
TGAACAAACCGGTCTGCTCGACAAGGATGAAGAGGAAGGTGAAGCTGATGGAAATCCAACCTGGACTTGCATTAAGGCCA
TCTTACTTTTGCTTCTGGGAACTGCAATGGCAGCAGCATCTGCAGATCCTCTTGTTGATGCTGTGCACAATTTCTCAAAT
GCTACACATATTCCCTCCTTTTTCATCTCCTTCATTGTAATGCCCTTGGCTACTAATTCCAGCGAGGCTGTCTCAGCAAT
TATATTTGCTAGCCGGAAGAAGAAACGGACTTTGTCACTAACCTTCTCTGAGGTCTATGGTGGAGTGACCATGAACAACA
CACTCTGCCTCGCCGTGTTCTTGGCCCTTGTTTACGTGAGGGGCTTAACCTGGGATTTCTCATCGGAGGTACTCATCATC
CTCCTCGTGTGCATCATAATGGGCCTCTTCACCAGCTTCCGGACTGATTTCCCACTCTGGACATGCTTCGTCGCCTTCCT
TCTCTACCCGTTGTCGCTGATCATGGTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis