Browse Element(s) Details


OsAffx.26123.1.S1_at

Description tigr:9632.m02258
TID=OsAffx.26123.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2420011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24170Os.8059.1.S1_at11/114+13796968..13805493RNA recognition motif family protein, expressed
LOC_Os04g24180Os.11329.1.S1_at11/114+13810029..13816528DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os04g24190OsAffx.28985.2.S1_at11/114+13819076..13821680hypothetical protein
LOC_Os04g24190OsAffx.28985.2.S1_x_at11/114+13819076..13821680hypothetical protein
LOC_Os04g24190OsAffx.27547.1.S1_x_at1/114+13819076..13821680hypothetical protein
LOC_Os04g24200OsAffx.26123.1.S1_at11/114+13822043..13824201hypothetical protein
LOC_Os04g24210NANA4+13829988..13833948retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g24220Os.27036.1.S1_at11/114+13838508..13843546Protein kinase domain containing protein, expressed
LOC_Os04g24230NANA4+13846571..13849664transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26123.1.S1_at--109--9411Chr04:13822990..13823014 (25 bp)
TCGTCTCCGTAAGGTCTCCATGTGG
LOC_Os04g24200
OsAffx.26123.1.S1_at--111--6011Chr04:13823055..13823079 (25 bp)
GAGACCACATATTCAGTGTACCTGA
LOC_Os04g24200
OsAffx.26123.1.S1_at--414--10431Chr04:13823098..13823122 (25 bp)
TTATGCGTCACATCTCGAGTTGCTA
LOC_Os04g24200
OsAffx.26123.1.S1_at--326--9091Chr04:13823118..13823142 (25 bp)
TGCTACGACCCGAGCTGCAGATAGA
LOC_Os04g24200
OsAffx.26123.1.S1_at--1059--4371Chr04:13823159..13823183 (25 bp)
CCAACGTTGCGAGGGCTTCACATCA
LOC_Os04g24200
OsAffx.26123.1.S1_at--356--8391Chr04:13823230..13823254 (25 bp)
GGCGAAGGTCGATCCATGGGACAAA
LOC_Os04g24200
OsAffx.26123.1.S1_at--527--10291Chr04:13823312..13823336 (25 bp)
TTTCGTGCCGAAAGGGTCATTGGTG
LOC_Os04g24200
OsAffx.26123.1.S1_at--19--6671Chr04:13823336..13823360 (25 bp)
GTTGACTTATCATATACCCTCTGTA
LOC_Os04g24200
OsAffx.26123.1.S1_at--281--3231Chr04:13823368..13823392 (25 bp)
CAAGTATTTCAGTACCTCTACAGGT
LOC_Os04g24200
OsAffx.26123.1.S1_at--864--6971Chr04:13824071..13824095 (25 bp)
GTACGGCTGGACACCTGAAACGACA
LOC_Os04g24200
OsAffx.26123.1.S1_at--40--8231Chr04:13824098..13824122 (25 bp)
GGCAATTCTGTACGGAGTATCCTCA
LOC_Os04g24200
Target Sequence 
TCGTCTCCGTAAGGTCTCCATGTGGAGTAGGATGGCTACTTGGGAGGAGGACGACGATTGGCGAAGAGACCACATATTCA
GTGTACCTGACATTATAGTTGATGAGGATTATGCGTCACATCTCGAGTTGCTACGACCCGAGCTGCAGATAGACGACGCG
ACGGGCCGGCCAACGTTGCGAGGGCTTCACATCACTCGGCCCGCGATAAGCCTGAACGATGATGATAAGGTCAATTTCAT
GGCGAAGGTCGATCCATGGGACAAAAGGGGATGGGTGATCGCCGTCGACATGAGGAGCAAGAAGCTGGAAGATGTAGGCA
TTTTTCGTGCCGAAAGGGTCATTGGTGTTGACTTATCATATACCCTCTGTAGAATCTCCAAGTATTTCAGTACCTCTACA
GGTAAAAGTACGGCTGGACACCTGAAACGACAAGGGCAATTCTGTACGGAGTATCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis