Browse Element(s) Details


OsAffx.26152.1.S1_at

Description tigr:9632.m02431
TID=OsAffx.26152.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g259109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25890NANA4+15028107..15035932retrotransposon protein, putative, unclassified
LOC_Os04g25900Os.53255.1.S1_at11/114+15038182..15044423NB-ARC domain containing protein, expressed
LOC_Os04g25910OsAffx.26152.1.S1_at9/114+15048475..15051271hypothetical protein
LOC_Os04g25920OsAffx.26219.1.S1_x_at11/114+15054085..15054714MADS-box family protein, putative
LOC_Os04g25920OsAffx.26219.1.S1_at11/114+15054085..15054714MADS-box family protein, putative
LOC_Os04g25930OsAffx.26219.1.S1_x_at10/114+15058087..15058716hypothetical protein
LOC_Os04g25930OsAffx.26219.1.S1_at10/114+15058087..15058716hypothetical protein
LOC_Os04g25940OsAffx.30013.5.S1_x_at3/114+15062023..15064124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g25940Os.56292.1.S1_x_at2/114+15062023..15064124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g25940Os.56292.1.S1_at1/114+15062023..15064124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g25950NANA4+15069324..15069965transposon protein, putative, unclassified
LOC_Os04g25960OsAffx.26155.1.S1_x_at10/114+15073435..15081899hypothetical protein
LOC_Os04g25960Os.48948.1.S1_x_at7/114+15073435..15081899hypothetical protein
LOC_Os04g25960Os.48948.1.S1_at6/114+15073435..15081899hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26152.1.S1_at--677--6191Chr04:15051178..15051202 (25 bp)
GAGGAATGTCCTCGTCATATCATTT
LOC_Os04g25910
OsAffx.26152.1.S1_at--976--9971NONE
TACCAGGAGTTGCTTGTGTCCCAAG
NONE
OsAffx.26152.1.S1_at--968--1591Chr04:15050054..15050078 (25 bp)
AGCTCCGGCAGCTAGCGAACGGCAA
LOC_Os04g25910
OsAffx.26152.1.S1_at--80--5451Chr04:15050038..15050062 (25 bp)
GAACGGCAAATGGTCGCATCCCCTA
LOC_Os04g25910
OsAffx.26152.1.S1_at--184--4411NONE
GCCACAGCCAGCAGGTTGTCTGGGA
NONE
OsAffx.26152.1.S1_at--133--3112Chr04:14230119..14230143 (25 bp)
AATATCTTCCCCAAGGTATTCATGA
NONE
OsAffx.26152.1.S1_at--301--4911Chr04:15049290..15049314 (25 bp)
GCATTTCCCGTAGAATTGACCCTAG
LOC_Os04g25910
OsAffx.26152.1.S1_at--579--3151Chr04:15049277..15049301 (25 bp)
AATTGACCCTAGGAGCGTCTTCTCA
LOC_Os04g25910
OsAffx.26152.1.S1_at--1033--1631Chr04:15049264..15049288 (25 bp)
AGCGTCTTCTCAAGCGGTTTGTTGG
LOC_Os04g25910
OsAffx.26152.1.S1_at--864--10171Chr04:15049199..15049223 (25 bp)
TATAACGATGTTGCACTTCACTCAG
LOC_Os04g25910
OsAffx.26152.1.S1_at--969--2971Chr04:15048536..15048560 (25 bp)
AATGGGAGCTCCTTTTATGGCCTAC
LOC_Os04g25910
Target Sequence 
GAGGAATGTCCTCGTCATATCATTTTTTACCAGGAGTTGCTTGTGTCCCAAGGGCAAGCTCCGGCAGCTAGCGAACGGCA
AATGGTCGCATCCCCTACACCTCCAATGTACGCGCCACAGCCAGCAGGTTGTCTGGGAACAAATATCTTCCCCAAGGTAT
TCATGAAAAACTCTAGGGAAGTTTGCATTTCCCGTAGAATTGACCCTAGGAGCGTCTTCTCAAGCGGTTTGTTGGTATTT
CTTGCGATAACAGATAAAATTTGCAAGCGCACGGATATAACGATGTTGCACTTCACTCAGGAGTATTTCAAGGTATCGAT
TTCCACAGTGTGTGAGAGTGAGGAATGGGAGCTCCTTTTATGGCCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis