Browse Element(s) Details


OsAffx.26219.1.S1_at

Description tigr:9632.m02432
TID=OsAffx.26219.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2480011/11MADS-box family protein, putative
LOC_Os04g2479011/11MADS-box family protein, putative
LOC_Os04g2592011/11MADS-box family protein, putative
LOC_Os04g2593010/11hypothetical protein
LOC_Os04g248107/11MADS-box family protein, putative
LOC_Os04g258704/11SRF-type transcription factor family protein
LOC_Os04g289703/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24770NANA4+14203194..14203595hypothetical protein
LOC_Os04g24780NANA4+14209984..14212418retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g24790OsAffx.26219.1.S1_x_at11/114+14214918..14215547MADS-box family protein, putative
LOC_Os04g24790OsAffx.26219.1.S1_at11/114+14214918..14215547MADS-box family protein, putative
LOC_Os04g24800OsAffx.26219.1.S1_x_at11/114+14218916..14219545MADS-box family protein, putative
LOC_Os04g24800OsAffx.26219.1.S1_at11/114+14218916..14219545MADS-box family protein, putative
LOC_Os04g24804Os.51711.1.S1_at1/114+14224120..14228330expressed protein
LOC_Os04g24804Os.31845.2.S1_x_at1/114+14224120..14228330expressed protein
LOC_Os04g24810OsAffx.26219.1.S1_at7/114+14234445..14235074MADS-box family protein, putative
LOC_Os04g24810OsAffx.26219.1.S1_x_at6/114+14234445..14235074MADS-box family protein, putative
LOC_Os04g24820OsAffx.13963.1.S1_at11/114+14239849..14241465F-box domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26219.1.S1_at--852--3194Chr04:14218990..14219014 (25 bp)
CAAGGGCTTGACGAAGAAGGTTAGT
LOC_Os04g24800
OsAffx.26219.1.S1_at--516--5376Chr04:14234531..14234555 (25 bp)
GAAGAAGGTTAGTGAGTTCGCAACA
LOC_Os04g24810
OsAffx.26219.1.S1_at--848--1015Chr04:14219007..14219031 (25 bp)
AGGTTAGTGAGTTCGCAACACTATT
LOC_Os04g24800
OsAffx.26219.1.S1_at--255--9855Chr04:14234571..14234595 (25 bp)
TACGGTGAGGTTGAGGTGCAAGCAA
LOC_Os04g24810
OsAffx.26219.1.S1_at--121--7336Chr04:14234586..14234610 (25 bp)
GTGCAAGCAACGAAGGTTTGGCCGT
LOC_Os04g24810
OsAffx.26219.1.S1_at--955--894Chr04:14234620..14234644 (25 bp)
AGGCGACCAGAGTTCTCGAGCACTT
LOC_Os04g24810
OsAffx.26219.1.S1_at--115--5855Chr04:14234624..14234648 (25 bp)
GACCAGAGTTCTCGAGCACTTCAAG
LOC_Os04g24810
OsAffx.26219.1.S1_at--937--1215Chr04:14234630..14234654 (25 bp)
AGTTCTCGAGCACTTCAAGGCCATG
LOC_Os04g24810
OsAffx.26219.1.S1_at--137--10475Chr04:14219310..14219334 (25 bp)
TTACCAGCCTCGGATGGATGGCAAA
LOC_Os04g24800
OsAffx.26219.1.S1_at--340--1695Chr04:14219315..14219339 (25 bp)
AGCCTCGGATGGATGGCAAATGCAC
LOC_Os04g24800
OsAffx.26219.1.S1_at--951--4297Chr04:14234870..14234894 (25 bp)
CCTCAAGATTGTCAACGACCGCCTC
LOC_Os04g24810
Target Sequence 
CAAGGGCTTGACGAAGAAGGTTAGTGAGTTCGCAACACTATTNNTCATGGTGTACGGTGAGGTTGAGGTGCAAGCAACGA
AGGTTTGGCCGTCGGTGTGGGAGGCGACCAGAGTTCTCGAGCACTTCAAGGCCATGCCNCANCTGGNCAGATACAAGAAG
NTGANNGACCTAGAGGNCATCCTCAACNANNANNNNNNNNNNNTCANNGANNNGTTGCACANGGTGGNACNNGANGCTGA
TGAAAGCGAGACCAAGCTACTCCTCATTGAAGCCATCAATGGCCNCCGCCCGAGCCTCGAGGGTCTCACCATCGAGCANA
TTACCAGCCTCGGATGGATGGCAAATGCACNCCTCAAGATTGTCAACGACCGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis