Browse Element(s) Details


OsAffx.26219.1.S1_x_at

Description tigr:9632.m02432
TID=OsAffx.26219.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2592011/11MADS-box family protein, putative
LOC_Os04g2480011/11MADS-box family protein, putative
LOC_Os04g2479011/11MADS-box family protein, putative
LOC_Os04g2593010/11hypothetical protein
LOC_Os04g248106/11MADS-box family protein, putative
LOC_Os04g289705/11hypothetical protein
LOC_Os04g258703/11SRF-type transcription factor family protein
LOC_Os03g386101/11SRF-type transcription factor family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25890NANA4+15028107..15035932retrotransposon protein, putative, unclassified
LOC_Os04g25900Os.53255.1.S1_at11/114+15038182..15044423NB-ARC domain containing protein, expressed
LOC_Os04g25910OsAffx.26152.1.S1_at9/114+15048475..15051271hypothetical protein
LOC_Os04g25920OsAffx.26219.1.S1_x_at11/114+15054085..15054714MADS-box family protein, putative
LOC_Os04g25920OsAffx.26219.1.S1_at11/114+15054085..15054714MADS-box family protein, putative
LOC_Os04g25930OsAffx.26219.1.S1_x_at10/114+15058087..15058716hypothetical protein
LOC_Os04g25930OsAffx.26219.1.S1_at10/114+15058087..15058716hypothetical protein
LOC_Os04g25940OsAffx.30013.5.S1_x_at3/114+15062023..15064124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g25940Os.56292.1.S1_x_at2/114+15062023..15064124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g25940Os.56292.1.S1_at1/114+15062023..15064124retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g25950NANA4+15069324..15069965transposon protein, putative, unclassified
LOC_Os04g25960OsAffx.26155.1.S1_x_at10/114+15073435..15081899hypothetical protein
LOC_Os04g25960Os.48948.1.S1_x_at7/114+15073435..15081899hypothetical protein
LOC_Os04g25960Os.48948.1.S1_at6/114+15073435..15081899hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26219.1.S1_x_at--851--3194Chr04:14218990..14219014 (25 bp)
CAAGGGCTTGACGAAGAAGGTTAGT
LOC_Os04g24800
OsAffx.26219.1.S1_x_at--849--1015Chr04:14219007..14219031 (25 bp)
AGGTTAGTGAGTTCGCAACACTATT
LOC_Os04g24800
OsAffx.26219.1.S1_x_at--120--7336Chr04:14234586..14234610 (25 bp)
GTGCAAGCAACGAAGGTTTGGCCGT
LOC_Os04g24810
OsAffx.26219.1.S1_x_at--954--894Chr04:14234620..14234644 (25 bp)
AGGCGACCAGAGTTCTCGAGCACTT
LOC_Os04g24810
OsAffx.26219.1.S1_x_at--938--1215Chr04:14234630..14234654 (25 bp)
AGTTCTCGAGCACTTCAAGGCCATG
LOC_Os04g24810
OsAffx.26219.1.S1_x_at--831--5556Chr04:14234760..14234784 (25 bp)
GAAAGCGAGACCAAGCTACTCCTCA
LOC_Os04g24810
OsAffx.26219.1.S1_x_at--430--5997Chr04:14234766..14234790 (25 bp)
GAGACCAAGCTACTCCTCATTGAAG
LOC_Os04g24810
OsAffx.26219.1.S1_x_at--436--5874Chr04:14219281..14219305 (25 bp)
GAGCCTCGAGGGTCTCACCATCGAG
LOC_Os04g24800
OsAffx.26219.1.S1_x_at--138--10475Chr04:14219310..14219334 (25 bp)
TTACCAGCCTCGGATGGATGGCAAA
LOC_Os04g24800
OsAffx.26219.1.S1_x_at--339--1695Chr04:14219315..14219339 (25 bp)
AGCCTCGGATGGATGGCAAATGCAC
LOC_Os04g24800
OsAffx.26219.1.S1_x_at--333--3737Chr04:14234871..14234895 (25 bp)
CTCAAGATTGTCAACGACCGCCTCA
LOC_Os04g24810
Target Sequence 
CAAGGGCTTGACGAAGAAGGTTAGTGAGTTCGCAACACTATTNNTCATGGTGTACGGTGAGGTTGAGGTGCAAGCAACGA
AGGTTTGGCCGTCGGTGTGGGAGGCGACCAGAGTTCTCGAGCACTTCAAGGCCATGCCNCANCTGGNCAGATACAAGAAG
NTGANNGACCTAGAGGNCATCCTCAACNANNANNNNNNNNNNNTCANNGANNNGTTGCACANGGTGGNACNNGANGCTGA
TGAAAGCGAGACCAAGCTACTCCTCATTGAAGCCATCAATGGCCNCCGCCCGAGCCTCGAGGGTCTCACCATCGAGCANA
TTACCAGCCTCGGATGGATGGCAAATGCACNCCTCAAGATTGTCAACGACCGCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26219.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis