Browse Element(s) Details


OsAffx.2622.1.S1_at

Description tigr:9630.m01446
TID=OsAffx.2622.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1544011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15420OsAffx.20313.1.S1_x_at6/112+8626224..8628544hypothetical protein
LOC_Os02g15420OsAffx.18764.1.S1_at1/112+8626224..8628544hypothetical protein
LOC_Os02g15420OsAffx.6537.1.S1_at1/112+8626224..8628544hypothetical protein
LOC_Os02g15430OsAffx.12055.1.S1_at10/112+8640325..8644849hypothetical protein
LOC_Os02g15440OsAffx.2622.1.S1_at11/112+8652189..8652676hypothetical protein
LOC_Os02g15450OsAffx.24268.1.S1_at6/112+8657953..8658393hypothetical protein
LOC_Os02g15460Os.53422.1.S1_at11/112+8659225..8660520expressed protein
LOC_Os02g15460OsAffx.24268.1.S1_s_at11/112+8659225..8660520expressed protein
LOC_Os02g15460OsAffx.24268.1.S1_at1/112+8659225..8660520expressed protein
LOC_Os02g15470NANA2+8664543..8667607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15480NANA2+8669169..8671062transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15490Os.47463.1.S1_x_at6/112+8671153..8674094transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g15490Os.14491.2.S1_x_at5/112+8671153..8674094transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2622.1.S1_at--940--6131Chr02:8652599..8652623 (25 bp)
GATGGTTAGGGAGGTTCCTGTCCAA
LOC_Os02g15440
OsAffx.2622.1.S1_at--772--1011Chr02:8652588..8652612 (25 bp)
AGGTTCCTGTCCAAAGATCCCTGGA
LOC_Os02g15440
OsAffx.2622.1.S1_at--1059--8091Chr02:8652566..8652590 (25 bp)
GGACCTGGAACATGCTGTCCTTGCT
LOC_Os02g15440
OsAffx.2622.1.S1_at--1044--7631Chr02:8652524..8652548 (25 bp)
GGGAGATCGTCCTATTCTAGATTTC
LOC_Os02g15440
OsAffx.2622.1.S1_at--83--9411Chr02:8652518..8652542 (25 bp)
TCGTCCTATTCTAGATTTCGTCCCT
LOC_Os02g15440
OsAffx.2622.1.S1_at--517--7791Chr02:8652481..8652505 (25 bp)
GGTCCTGCGTTGTGCTCCGAGATAC
LOC_Os02g15440
OsAffx.2622.1.S1_at--425--4071Chr02:8652464..8652488 (25 bp)
CGAGATACCGCCCATTTCTGCACAT
LOC_Os02g15440
OsAffx.2622.1.S1_at--867--191Chr02:8652451..8652475 (25 bp)
ATTTCTGCACATCCGTTTCCTCGTC
LOC_Os02g15440
OsAffx.2622.1.S1_at--156--9271Chr02:8652434..8652458 (25 bp)
TCCTCGTCCTTCCACAAGTGCTGAA
LOC_Os02g15440
OsAffx.2622.1.S1_at--647--2931Chr02:8652251..8652275 (25 bp)
AAGGCAACAAACCACTGTTCTGGCC
LOC_Os02g15440
OsAffx.2622.1.S1_at--1007--4571Chr02:8652224..8652248 (25 bp)
GCGCAATCAATATCCCCAGCAATAA
LOC_Os02g15440
Target Sequence 
GATGGTTAGGGAGGTTCCTGTCCAAAGATCCCTGGACCTGGAACATGCTGTCCTTGCTTCGCCGGCGATGGCTAGGGGAG
ATCGTCCTATTCTAGATTTCGTCCCTCCCCGTCTCGACGGTCCTGCGTTGTGCTCCGAGATACCGCCCATTTCTGCACAT
CCGTTTCCTCGTCCTTCCACAAGTGCTGAAGGGAGCGATGTTGGGGTAGAAGTTTCCAAGGCAACAAACCACTGTTCTGG
CCCCGCGCAATCAATATCCCCAGCAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis