Browse Element(s) Details


OsAffx.26239.1.S1_at

Description tigr:9632.m02825
TID=OsAffx.26239.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2984011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29810OsAffx.14036.1.S1_at11/114+17577644..17579050hypothetical protein
LOC_Os04g29820Os.47463.1.S1_x_at1/114+17587098..17590833transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29820Os.14491.2.S1_x_at1/114+17587098..17590833transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29830NANA4+17593642..17597084transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29840OsAffx.26239.1.S1_at11/114+17603608..17604018hypothetical protein
LOC_Os04g29850OsAffx.1349.1.S1_x_at1/114+17608138..17608368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g29860NANA4+17611881..17612327hypothetical protein
LOC_Os04g29870NANA4+17614964..17622236retrotransposon protein, putative, unclassified
LOC_Os04g29880OsAffx.26240.1.S1_at11/114+17628612..17631189hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26239.1.S1_at--7--9411Chr04:17603964..17603988 (25 bp)
TCGTCCCAAAGCAAGGAGCTTCTGT
LOC_Os04g29840
OsAffx.26239.1.S1_at--749--8071Chr04:17603950..17603974 (25 bp)
GGAGCTTCTGTTATGGCCTGATTCT
LOC_Os04g29840
OsAffx.26239.1.S1_at--839--2931Chr04:17603888..17603912 (25 bp)
AAGGCAGGGCCTCCTTCGTTCAAGG
LOC_Os04g29840
OsAffx.26239.1.S1_at--691--6991Chr04:17603803..17603827 (25 bp)
GTACGGGCATGTACAACGGCATGGA
LOC_Os04g29840
OsAffx.26239.1.S1_at--913--1811Chr04:17603779..17603803 (25 bp)
ACGCCATGATTCTGTTAGTCTCACG
LOC_Os04g29840
OsAffx.26239.1.S1_at--980--6771Chr04:17603766..17603790 (25 bp)
GTTAGTCTCACGGTCGACGAGGTAC
LOC_Os04g29840
OsAffx.26239.1.S1_at--302--5771Chr04:17603751..17603775 (25 bp)
GACGAGGTACGCATCGAGGTCACAA
LOC_Os04g29840
OsAffx.26239.1.S1_at--501--7831Chr04:17603734..17603758 (25 bp)
GGTCACAACCGATGATTTTGCAGTA
LOC_Os04g29840
OsAffx.26239.1.S1_at--157--10391Chr04:17603719..17603743 (25 bp)
TTTTGCAGTATGGAAAGCCCACCGA
LOC_Os04g29840
OsAffx.26239.1.S1_at--405--6691Chr04:17603692..17603716 (25 bp)
GTTCCAAGAATTTCTGTCGGTCTTC
LOC_Os04g29840
OsAffx.26239.1.S1_at--704--7191Chr04:17603677..17603701 (25 bp)
GTCGGTCTTCTATGATACTTACTAC
LOC_Os04g29840
Target Sequence 
TCGTCCCAAAGCAAGGAGCTTCTGTTATGGCCTGATTCTCTGCTTCCTCTGCTCCTCAAGGACAAATTTGAGGTTGAAGG
CAGGGCCTCCTTCGTTCAAGGAGATGATGCAACATCCATTGCCGTCACACCTCTCCGTAGCGGCCTGCCGGTGATGCCTG
TGTACGGGCATGTACAACGGCATGGACGCCATGATTCTGTTAGTCTCACGGTCGACGAGGTACGCATCGAGGTCACAACC
GATGATTTTGCAGTATGGAAAGCCCACCGAAAGTTCCAAGAATTTCTGTCGGTCTTCTATGATACTTACTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis