Browse Element(s) Details


OsAffx.26240.1.S1_at

Description tigr:9632.m02830
TID=OsAffx.26240.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=wall-associated kinase 1, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2988011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29840OsAffx.26239.1.S1_at11/114+17603608..17604018hypothetical protein
LOC_Os04g29850OsAffx.1349.1.S1_x_at1/114+17608138..17608368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g29860NANA4+17611881..17612327hypothetical protein
LOC_Os04g29870NANA4+17614964..17622236retrotransposon protein, putative, unclassified
LOC_Os04g29880OsAffx.26240.1.S1_at11/114+17628612..17631189hypothetical protein
LOC_Os04g29890Os.27037.1.A1_at1/114+17631961..17636147transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29900NANA4+17638702..17639961transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29910Os.14491.2.S1_x_at5/114+17640191..17642398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29910Os.47463.1.S1_x_at4/114+17640191..17642398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29920Os.10028.2.S1_at11/114+17650668..17652508Reticulon family protein, expressed
LOC_Os04g29920Os.10028.1.S1_x_at10/114+17650668..17652508Reticulon family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26240.1.S1_at--658--10111Chr04:17630590..17630614 (25 bp)
TATGGTGTCTCCTATGCAGCATTGC
LOC_Os04g29880
OsAffx.26240.1.S1_at--94--5131Chr04:17630561..17630585 (25 bp)
GCACAGGATGTTGCACTATCGACTT
LOC_Os04g29880
OsAffx.26240.1.S1_at--360--7791Chr04:17630535..17630559 (25 bp)
GGTGCCGAGATCAATGCTTATTCAT
LOC_Os04g29880
OsAffx.26240.1.S1_at--622--5211Chr04:17630502..17630526 (25 bp)
GAATTTAAATTCGTCCGCCAAGCAG
LOC_Os04g29880
OsAffx.26240.1.S1_at--858--2611Chr04:17630454..17630478 (25 bp)
AACCGAAGCTTGTCATGGGATACGA
LOC_Os04g29880
OsAffx.26240.1.S1_at--761--10191Chr04:17630427..17630451 (25 bp)
TATATCACTGATCCTGCTTCGCGTG
LOC_Os04g29880
OsAffx.26240.1.S1_at--171--10631Chr04:17630410..17630434 (25 bp)
TTCGCGTGGTCTCAGTTGGAAGATC
LOC_Os04g29880
OsAffx.26240.1.S1_at--284--2811Chr04:17630391..17630415 (25 bp)
AAGATCCCTGATCAACCAGACTGCG
LOC_Os04g29880
OsAffx.26240.1.S1_at--1114--2771Chr04:17630322..17630346 (25 bp)
AAGAGCATTTGCATCGACCCAGACG
LOC_Os04g29880
OsAffx.26240.1.S1_at--375--3211Chr04:17630289..17630313 (25 bp)
CAAGGCTACAACTGCATGTGCCGTA
LOC_Os04g29880
OsAffx.26240.1.S1_at--429--10191Chr04:17630242..17630266 (25 bp)
TATTTTGGATGGCTGTTCACCGAAT
LOC_Os04g29880
Target Sequence 
TATGGTGTCTCCTATGCAGCATTGCAACGGCACAGGATGTTGCACTATCGACTTTGGTGCCGAGATCAATGCTTATTCAT
CTACTATCGAATTTAAATTCGTCCGCCAAGCAGAAACCAATCTAGAATCGTACCATAACCGAAGCTTGTCATGGGATACG
ATCTATATCACTGATCCTGCTTCGCGTGGTCTCAGTTGGAAGATCCCTGATCAACCAGACTGCGCAAGCGCCCGTAAAAA
CCAGACGAGCTATGCTTGTGTTAGCAACAAGAGCATTTGCATCGACCCAGACGACGTCAAACAAGGCTACAACTGCATGT
GCCGTAATGGCTACATAGGCAATCCTTATATTTTGGATGGCTGTTCACCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis