Browse Element(s) Details


Os.10028.1.S1_x_at

Description gb:AK100139.1
DB_XREF= gi:32985348
TID=Os.10028.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10028 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023010N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010N14, full insert sequence.
FL= gb:AK100139.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2992010/11Reticulon family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29880OsAffx.26240.1.S1_at11/114+17628612..17631189hypothetical protein
LOC_Os04g29890Os.27037.1.A1_at1/114+17631961..17636147transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29900NANA4+17638702..17639961transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29910Os.14491.2.S1_x_at5/114+17640191..17642398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29910Os.47463.1.S1_x_at4/114+17640191..17642398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29920Os.10028.2.S1_at11/114+17650668..17652508Reticulon family protein, expressed
LOC_Os04g29920Os.10028.1.S1_x_at10/114+17650668..17652508Reticulon family protein, expressed
LOC_Os04g29930NANA4+17658658..17662825Protein kinase domain containing protein
LOC_Os04g29940Os.14919.1.S1_at6/114+17670816..17676743transposon protein, putative, Mutator sub-class
LOC_Os04g29940Os.56216.1.S1_at2/114+17670816..17676743transposon protein, putative, Mutator sub-class
LOC_Os04g29940OsAffx.29313.1.S1_at1/114+17670816..17676743transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10028.1.S1_x_at--79--7971Chr04:17651766..17651790 (25 bp)
GGATCATTTCTATCATTGGCAGCCT
LOC_Os04g29920
Os.10028.1.S1_x_at--1158--11Chr04:17651780..17651804 (25 bp)
ATTGGCAGCCTGACTGATTTCACCA
LOC_Os04g29920
Os.10028.1.S1_x_at--214--10231Chr04:17651945..17651969 (25 bp)
TATTGTTGCTGTTCTGACCATCCCT
LOC_Os04g29920
Os.10028.1.S1_x_at--378--5851Chr04:17651960..17651984 (25 bp)
GACCATCCCTGCATTGTACCAGAAG
LOC_Os04g29920
Os.10028.1.S1_x_at--899--6011Chr04:17652054..17652078 (25 bp)
GAGAGATTCTCTGCCAAGTGCTTCC
LOC_Os04g29920
Os.10028.1.S1_x_at--112--2871Chr04:17652069..17652093 (25 bp)
AAGTGCTTCCACAGGGCTAGGGATT
LOC_Os04g29920
Os.10028.1.S1_x_at--33--5571Chr04:17652110..17652134 (25 bp)
GAAAGAGCCATGACCTGATCAATAT
LOC_Os04g29920
Os.10028.1.S1_x_at--570--5031Chr04:17652309..17652333 (25 bp)
GCAGTTCTTGTTGAGATGCCTGTAA
LOC_Os04g29920
Os.10028.1.S1_x_at--919--591Chr04:17652324..17652348 (25 bp)
ATGCCTGTAATGGTTGCGTTTGTAA
LOC_Os04g29920
Os.10028.1.S1_x_at--40--5031Chr04:17652376..17652400 (25 bp)
GCAGATTTTGGTTTCTTTTGGCCTT
LOC_Os04g29920
Os.10028.1.S1_x_at--688--10391NONE
TTTTGGCCTTCGATCACTAGTTTCC
NONE
Target Sequence 
GGATCATTTCTATCATTGGCAGCCTGACTGATTTCACCACTTTANTGTTACACAAGTATTGTTGCTGTTCTGACCATCCC
TGCATTGTACCAGAAGTATGAGGAATGCATTGACAGATACATGAGGTTTGCGTATTTGAACCTGCAGATGTACGAGATGG
TGTACGAGAGATTCTCTGCCAAGTGCTTCCACAGGGCTAGGGATTTGGTTATTGAGGNTCTGAAAGAGCCATGACCTGAT
CAATATTGTGTTTGCTTGTACAAGATGGTGGAATTGGGTTTTTAACTGGATGATGATTGATTTGTTGTTTCCTGTATAGA
GAGAGGGATAGGTTGATTGATTTTTTCCCCCATGGAGTGCTGGTTTTGTTTGTTTGATTTCAATCATATGCAGATAGTTG
GGGCCTTGATGGTCAGAGATGCAGTTCTTGTTGAGATGCCTGTAATGGTTGCGTTTGTAAATTGTGTCCAAAGGGACAAA
ACAGTGTGCAGATTTTGGTTTCTTTTGGCCTTCGATCACTAGTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10028.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis