Browse Element(s) Details


OsAffx.26269.1.S1_at

Description tigr:9632.m02990
TID=OsAffx.26269.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3143011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31400OsAffx.3965.1.S1_at11/114+18592234..18595932expressed protein
LOC_Os04g31410Os.51437.1.S1_at11/114+18599036..18599823expressed protein
LOC_Os04g31420Os.46012.2.S1_x_at8/114+18603406..18608201retrotransposon protein, putative, unclassified
LOC_Os04g31420Os.46012.3.S1_x_at7/114+18603406..18608201retrotransposon protein, putative, unclassified
LOC_Os04g31420Os.27088.1.A1_x_at6/114+18603406..18608201retrotransposon protein, putative, unclassified
LOC_Os04g31420Os.54691.1.S1_x_at1/114+18603406..18608201retrotransposon protein, putative, unclassified
LOC_Os04g31430OsAffx.26269.1.S1_at11/114+18613798..18614088hypothetical protein
LOC_Os04g31440NANA4+18618289..18619494Zinc knuckle family protein
LOC_Os04g31460Os.51625.1.S1_at10/114+18636414..18637062expressed protein
LOC_Os04g31470OsAffx.3966.1.S1_at11/114+18638500..18639072hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26269.1.S1_at--69--4691Chr04:18613909..18613933 (25 bp)
GCGGATCAGCTCGACATGGTCCAGA
LOC_Os04g31430
OsAffx.26269.1.S1_at--753--2111Chr04:18613922..18613946 (25 bp)
ACATGGTCCAGAGCCGGCGCGTCTG
LOC_Os04g31430
OsAffx.26269.1.S1_at--1092--8391Chr04:18613937..18613961 (25 bp)
GGCGCGTCTGGTCGACGACCAAACA
LOC_Os04g31430
OsAffx.26269.1.S1_at--42--7231Chr04:18613947..18613971 (25 bp)
GTCGACGACCAAACATGATACCGGT
LOC_Os04g31430
OsAffx.26269.1.S1_at--133--2511Chr04:18613958..18613982 (25 bp)
AACATGATACCGGTGCACTAGACAA
LOC_Os04g31430
OsAffx.26269.1.S1_at--948--6451Chr04:18613963..18613987 (25 bp)
GATACCGGTGCACTAGACAAGGACA
LOC_Os04g31430
OsAffx.26269.1.S1_at--454--1771Chr04:18613966..18613990 (25 bp)
ACCGGTGCACTAGACAAGGACAAAC
LOC_Os04g31430
OsAffx.26269.1.S1_at--648--2911Chr04:18613981..18614005 (25 bp)
AAGGACAAACCAGTGTGCCTCCGGG
LOC_Os04g31430
OsAffx.26269.1.S1_at--485--2371Chr04:18613987..18614011 (25 bp)
AAACCAGTGTGCCTCCGGGACCATA
LOC_Os04g31430
OsAffx.26269.1.S1_at--457--9191Chr04:18613996..18614020 (25 bp)
TGCCTCCGGGACCATAGCTGCACGG
LOC_Os04g31430
OsAffx.26269.1.S1_at--293--4211Chr04:18614026..18614050 (25 bp)
CCGCCAGGCGTGTCCTACATCGGGT
LOC_Os04g31430
Target Sequence 
GCGGATCAGCTCGACATGGTCCAGAGCCGGCGCGTCTGGTCGACGACCAAACATGATACCGGTGCACTAGACAAGGACAA
ACCAGTGTGCCTCCGGGACCATAGCTGCACGGAGCCTCCGCCAGGCGTGTCCTACATCGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis