Browse Element(s) Details


Os.51437.1.S1_at

Description gb:AK062807.1
DB_XREF= gi:32972825
TID=Os.51437.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51437 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-D07, full insert sequence.
FL= gb:AK062807.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3141011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31360OsAffx.26268.1.S1_at11/114+18573803..18574312hypothetical protein
LOC_Os04g31370Os.47130.4.A1_x_at1/114+18578034..18578360retrotransposon protein, putative, unclassified
LOC_Os04g31390Os.52415.1.S1_at11/114+18583326..18588735Vacuolar protein sorting 11, putative, expressed
LOC_Os04g31400OsAffx.3965.1.S1_at11/114+18592234..18595932expressed protein
LOC_Os04g31410Os.51437.1.S1_at11/114+18599036..18599823expressed protein
LOC_Os04g31420Os.46012.2.S1_x_at8/114+18603406..18608201retrotransposon protein, putative, unclassified
LOC_Os04g31420Os.46012.3.S1_x_at7/114+18603406..18608201retrotransposon protein, putative, unclassified
LOC_Os04g31420Os.27088.1.A1_x_at6/114+18603406..18608201retrotransposon protein, putative, unclassified
LOC_Os04g31420Os.54691.1.S1_x_at1/114+18603406..18608201retrotransposon protein, putative, unclassified
LOC_Os04g31430OsAffx.26269.1.S1_at11/114+18613798..18614088hypothetical protein
LOC_Os04g31440NANA4+18618289..18619494Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51437.1.S1_at--1006--971Chr04:18599304..18599328 (25 bp)
AGGAGTACACCACCGGCGCGTCCTG
LOC_Os04g31410
Os.51437.1.S1_at--605--4972Chr04:18599438..18599462 (25 bp)
GCATCTACCACAACCGATCGTGTTA
LOC_Os04g31410
Os.51437.1.S1_at--356--8731Chr04:18599458..18599482 (25 bp)
TGTTAAGTACGTACGTACCTCGCGA
LOC_Os04g31410
Os.51437.1.S1_at--1095--9951Chr04:18599473..18599497 (25 bp)
TACCTCGCGACCGATTTTGTTGGGC
LOC_Os04g31410
Os.51437.1.S1_at--331--5811Chr04:18599481..18599505 (25 bp)
GACCGATTTTGTTGGGCGCGTTGCC
LOC_Os04g31410
Os.51437.1.S1_at--974--7551Chr04:18599494..18599518 (25 bp)
GGGCGCGTTGCCGTTGGATAATAAT
LOC_Os04g31410
Os.51437.1.S1_at--1006--6511Chr04:18599550..18599574 (25 bp)
GTTGACGTTGGATGTTACGAACTTT
LOC_Os04g31410
Os.51437.1.S1_at--24--9951Chr04:18599565..18599589 (25 bp)
TACGAACTTTCGGTCTATACAGTAT
LOC_Os04g31410
Os.51437.1.S1_at--744--10191Chr04:18599587..18599611 (25 bp)
TATATATGCTACCTTCTTCCTTTCT
LOC_Os04g31410
Os.51437.1.S1_at--904--6771Chr04:18599640..18599664 (25 bp)
GTTACGAATTGATTGCCGTGATAAT
LOC_Os04g31410
Os.51437.1.S1_at--485--3191Chr04:18599676..18599700 (25 bp)
CAATCTTGGTGAGTGGTCTACGGTA
LOC_Os04g31410
Target Sequence 
AGGAGTACACCACCGGCGCGTCCTGCAGGCGCGGGGTGGTGGCAACGTCAACCCGTCGCTGGTGGCCGACCGGCAGAGGT
GCATCGGCAGCTGCCCGGCGCGAGGGGGATCGTACACCGGGAGGGGCAACCAGTGCATCTACCACAACCGATCGTGTTAA
GTACGTACGTACCTCGCGACCGATTTTGTTGGGCGCGTTGCCGTTGGATAATAATCTTGGTGCATGATGAGAGACGTTGA
GGAAATGTTGACGTTGGATGTTACGAACTTTCGGTCTATACAGTATATATGCTACCTTCTTCCTTTCTTCTTTTTTTGTG
TGTGTGTGTGGTGGGGGTTACGAATTGATTGCCGTGATAATGAATATGTTACCAATCTTGGTGAGTGGTCTACGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis