Browse Element(s) Details


OsAffx.26268.1.S1_at

Description tigr:9632.m02983
TID=OsAffx.26268.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3136011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31320Os.6614.1.S1_at11/114+18548072..18550666SWIB/MDM2 domain containing protein, expressed
LOC_Os04g31330Os.9240.1.S1_at11/114+18553235..18555852Exo70 exocyst complex subunit family protein, expressed
LOC_Os04g31340Os.14139.1.S1_at11/114+18559522..18564663SNF1-related protein kinase regulatory gamma subunit 1, putative, expressed
LOC_Os04g31350Os.49054.1.S1_at10/114+18570301..18571461expressed protein
LOC_Os04g31360OsAffx.26268.1.S1_at11/114+18573803..18574312hypothetical protein
LOC_Os04g31370Os.47130.4.A1_x_at1/114+18578034..18578360retrotransposon protein, putative, unclassified
LOC_Os04g31390Os.52415.1.S1_at11/114+18583326..18588735Vacuolar protein sorting 11, putative, expressed
LOC_Os04g31400OsAffx.3965.1.S1_at11/114+18592234..18595932expressed protein
LOC_Os04g31410Os.51437.1.S1_at11/114+18599036..18599823expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26268.1.S1_at--1141--4691Chr04:18574247..18574271 (25 bp)
GCGGCTGTCACGGAAAGCGGCCATA
LOC_Os04g31360
OsAffx.26268.1.S1_at--676--2351Chr04:18574234..18574258 (25 bp)
AAAGCGGCCATAAACGGCCCTCAGA
LOC_Os04g31360
OsAffx.26268.1.S1_at--303--5531Chr04:18574224..18574248 (25 bp)
TAAACGGCCCTCAGAATAAATTAAT
LOC_Os04g31360
OsAffx.26268.1.S1_at--555--9751Chr04:18574032..18574227 (25 bp)
TAATCTTGTATAAGACGTTGCAGGG
LOC_Os04g31360
OsAffx.26268.1.S1_at--614--3831Chr04:18574006..18574030 (25 bp)
CTGCGAGGAGGCCAGTTGATGAGCT
LOC_Os04g31360
OsAffx.26268.1.S1_at--285--8871Chr04:18573990..18574014 (25 bp)
TGATGAGCTCCCGAAAAAGCCGCAT
LOC_Os04g31360
OsAffx.26268.1.S1_at--7--551Chr04:18573967..18573991 (25 bp)
ATCCCTCCATTCCTGTCGATACAAA
LOC_Os04g31360
OsAffx.26268.1.S1_at--360--91Chr04:18573959..18573983 (25 bp)
ATTCCTGTCGATACAAAGGAGGCAG
LOC_Os04g31360
OsAffx.26268.1.S1_at--993--2911Chr04:18573944..18573968 (25 bp)
AAGGAGGCAGCCAGCGAACATCCAT
LOC_Os04g31360
OsAffx.26268.1.S1_at--900--1631Chr04:18573932..18573956 (25 bp)
AGCGAACATCCATCACCGCCTTGAT
LOC_Os04g31360
OsAffx.26268.1.S1_at--1153--4511Chr04:18573906..18573930 (25 bp)
GCCGCTGCCTGGAAGGCATCAGAGC
LOC_Os04g31360
Target Sequence 
GCGGCTGTCACGGAAAGCGGCCATAAACGGCCCTCAGAATAAATTAATCTTGTATAAGACGTTGCAGGGGCTGCGAGGAG
GCCAGTTGATGAGCTCCCGAAAAAGCCGCATCCCTCCATTCCTGTCGATACAAAGGAGGCAGCCAGCGAACATCCATCAC
CGCCTTGATCGCCGCTGCCTGGAAGGCATCAGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis