Browse Element(s) Details


Os.14139.1.S1_at

Description gb:AK101795.1
DB_XREF= gi:32987004
TID=Os.14139.1
CNT=33
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.14139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033066B14, full insert sequence.
FL= gb:AK071912.1 gb:AK104732.1 gb:AK101795.1 gb:AK104588.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3134011/11SNF1-related protein kinase regulatory gamma subunit 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31290OsAffx.14069.1.S1_x_at10/114+18533150..18535080Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g31290OsAffx.14069.1.S1_at9/114+18533150..18535080Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g31300OsAffx.21756.2.S1_x_at3/114+18540647..18543504transposon protein, putative, unclassified
LOC_Os04g31300OsAffx.21756.3.S1_x_at2/114+18540647..18543504transposon protein, putative, unclassified
LOC_Os04g31310OsAffx.3964.1.S1_at11/114+18545156..18546752hypothetical protein
LOC_Os04g31320Os.6614.1.S1_at11/114+18548072..18550666SWIB/MDM2 domain containing protein, expressed
LOC_Os04g31330Os.9240.1.S1_at11/114+18553235..18555852Exo70 exocyst complex subunit family protein, expressed
LOC_Os04g31340Os.14139.1.S1_at11/114+18559522..18564663SNF1-related protein kinase regulatory gamma subunit 1, putative, expressed
LOC_Os04g31350Os.49054.1.S1_at10/114+18570301..18571461expressed protein
LOC_Os04g31360OsAffx.26268.1.S1_at11/114+18573803..18574312hypothetical protein
LOC_Os04g31370Os.47130.4.A1_x_at1/114+18578034..18578360retrotransposon protein, putative, unclassified
LOC_Os04g31390Os.52415.1.S1_at11/114+18583326..18588735Vacuolar protein sorting 11, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14139.1.S1_at--204--6271Chr04:18560250..18560274 (25 bp)
GATGTCCAATATCTTCTAACTGCCC
LOC_Os04g31340
Os.14139.1.S1_at--864--131Chr04:18560034..18560055 (22 bp)
ATTACAGGACAATCACGGCCAAGGA
LOC_Os04g31340
Os.14139.1.S1_at--445--7791Chr04:18559997..18560021 (25 bp)
GGTCCGGCAACACCTTCAGGAGCAA
LOC_Os04g31340
Os.14139.1.S1_at--178--8331Chr04:18559951..18559975 (25 bp)
GGCTCCGTCATCACATGCAGAAGGG
LOC_Os04g31340
Os.14139.1.S1_at--544--7631Chr04:18559824..18559848 (25 bp)
GGGACATAATCTCCAAGCTGGTGCA
LOC_Os04g31340
Os.14139.1.S1_at--725--6531Chr04:18559777..18559801 (25 bp)
GATTTCTTCGATGGTGTTGTTCCCC
LOC_Os04g31340
Os.14139.1.S1_at--1061--1471Chr04:18559741..18559765 (25 bp)
AGCACTGTATGACACGGCCCTTGAG
LOC_Os04g31340
Os.14139.1.S1_at--505--8411Chr04:18559726..18559750 (25 bp)
GGCCCTTGAGATTTCATCACGCTGG
LOC_Os04g31340
Os.14139.1.S1_at--548--391Chr04:18559711..18559735 (25 bp)
ATCACGCTGGTGTGCTCTTGTAAAT
LOC_Os04g31340
Os.14139.1.S1_at--627--2131Chr04:18559635..18559659 (25 bp)
ACAGTTTGCCTTGTGTAGTTCTTTG
LOC_Os04g31340
Os.14139.1.S1_at--294--291Chr04:18559583..18559607 (25 bp)
ATAGCACGGGTGTACATTCAATAAC
LOC_Os04g31340
Target Sequence 
GATGTCCAATATCTTCTAACTGCCCCCAACATATACAAAGATTACAGGACAATCACGGCCAAGGATTTCCTTACCGCGGT
CCGGCAACACCTTCAGGAGCAACACGAGGCCTCGCCGTTGCTCGGCTCCGTCATCACATGCAGAAGGGATGATGAAGTCA
AGGACATCATACTGAAGCTGGACTCGGAGAAGATCCACAGGATCTACGTGATCGATGACAAGGGGAACACCGAGGGGGTC
ATCACGCTGAGGGACATAATCTCCAAGCTGGTGCACGAGCCACGCCATTACTTTGGGGATTTCTTCGATGGTGTTGTTCC
CCTGCCTCCAAACAGCACTGTATGACACGGCCCTTGAGATTTCATCACGCTGGTGTGCTCTTGTAAATTGTACATTATGT
CCCTTTACGACAATGGTTCCAAATGGATGGGAATAGTGTACAGTTTGCCTTGTGTAGTTCTTTGGCAGTGGAACAACTAA
TGGACTAATGGATAGCACGGGTGTACATTCAATAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis