Browse Element(s) Details


OsAffx.3964.1.S1_at

Description tigr:9632.m02978
TID=OsAffx.3964.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3131011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31270OsAffx.14067.1.S1_at11/114+18515321..18520273ribosome-associated GTPase YjeQ family protein, expressed
LOC_Os04g31270Os.18054.1.S1_s_at11/114+18515321..18520273ribosome-associated GTPase YjeQ family protein, expressed
LOC_Os04g31290OsAffx.14069.1.S1_x_at10/114+18533150..18535080Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g31290OsAffx.14069.1.S1_at9/114+18533150..18535080Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g31300OsAffx.21756.2.S1_x_at3/114+18540647..18543504transposon protein, putative, unclassified
LOC_Os04g31300OsAffx.21756.3.S1_x_at2/114+18540647..18543504transposon protein, putative, unclassified
LOC_Os04g31310OsAffx.3964.1.S1_at11/114+18545156..18546752hypothetical protein
LOC_Os04g31320Os.6614.1.S1_at11/114+18548072..18550666SWIB/MDM2 domain containing protein, expressed
LOC_Os04g31330Os.9240.1.S1_at11/114+18553235..18555852Exo70 exocyst complex subunit family protein, expressed
LOC_Os04g31340Os.14139.1.S1_at11/114+18559522..18564663SNF1-related protein kinase regulatory gamma subunit 1, putative, expressed
LOC_Os04g31350Os.49054.1.S1_at10/114+18570301..18571461expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3964.1.S1_at--761--3411Chr04:18545205..18545224 (20 bp)
CAGAAGTGGATTTGGAGGTATGTCA
LOC_Os04g31310
OsAffx.3964.1.S1_at--883--6153Chr11:5325129..5325150 (22 bp)
GAGGTATGTCATGAGGGCCTTCGCC
NONE
OsAffx.3964.1.S1_at--790--7112Chr04:18546625..18546649 (25 bp)
GTCATGAGGGCCTTCGCCCGACCTG
LOC_Os04g31310
OsAffx.3964.1.S1_at--46--5831Chr04:18546644..18546668 (25 bp)
GACCTGCCGAAACCGTCTAAACCAT
LOC_Os04g31310
OsAffx.3964.1.S1_at--292--9171Chr04:18546648..18546672 (25 bp)
TGCCGAAACCGTCTAAACCATCAAA
LOC_Os04g31310
OsAffx.3964.1.S1_at--659--5552Chr09:10911069..10911091 (23 bp)
GAAACCGTCTAAACCATCAAACATC
NONE
OsAffx.3964.1.S1_at--105--2652Chr10:3157574..3157696 (25 bp)
AACCATCAAACATCGGCTAAATCCC
NONE
OsAffx.3964.1.S1_at--886--371Chr04:18546667..18546691 (25 bp)
ATCAAACATCGGCTAAATCCCAGAT
LOC_Os04g31310
OsAffx.3964.1.S1_at--136--2091Chr04:18546672..18546696 (25 bp)
ACATCGGCTAAATCCCAGATGGACA
LOC_Os04g31310
OsAffx.3964.1.S1_at--510--8291Chr04:18546677..18546701 (25 bp)
GGCTAAATCCCAGATGGACACCAAA
LOC_Os04g31310
OsAffx.3964.1.S1_at--371--3031Chr04:18546682..18546706 (25 bp)
AATCCCAGATGGACACCAAAGGCGA
LOC_Os04g31310
Target Sequence 
CAGAAGTGGATTTGGAGGTATGTCATGAGGGCCTTCGCCCGACCTGCCGAAACCGTCTAAACCATCAAACATCGGCTAAA
TCCCAGATGGACACCAAAGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis