Browse Element(s) Details


Os.9240.1.S1_at

Description gb:AK103564.1
DB_XREF= gi:32988773
TID=Os.9240.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9240 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033132L03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132L03, full insert sequence.
FL= gb:AK103564.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3133011/11Exo70 exocyst complex subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31290OsAffx.14069.1.S1_x_at10/114+18533150..18535080Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g31290OsAffx.14069.1.S1_at9/114+18533150..18535080Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g31300OsAffx.21756.2.S1_x_at3/114+18540647..18543504transposon protein, putative, unclassified
LOC_Os04g31300OsAffx.21756.3.S1_x_at2/114+18540647..18543504transposon protein, putative, unclassified
LOC_Os04g31310OsAffx.3964.1.S1_at11/114+18545156..18546752hypothetical protein
LOC_Os04g31320Os.6614.1.S1_at11/114+18548072..18550666SWIB/MDM2 domain containing protein, expressed
LOC_Os04g31330Os.9240.1.S1_at11/114+18553235..18555852Exo70 exocyst complex subunit family protein, expressed
LOC_Os04g31340Os.14139.1.S1_at11/114+18559522..18564663SNF1-related protein kinase regulatory gamma subunit 1, putative, expressed
LOC_Os04g31350Os.49054.1.S1_at10/114+18570301..18571461expressed protein
LOC_Os04g31360OsAffx.26268.1.S1_at11/114+18573803..18574312hypothetical protein
LOC_Os04g31370Os.47130.4.A1_x_at1/114+18578034..18578360retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9240.1.S1_at--141--1551Chr04:18555254..18555278 (25 bp)
AGCATACCGTGCTTTTCTGGGAAGA
LOC_Os04g31330
Os.9240.1.S1_at--290--10751Chr04:18555367..18555391 (25 bp)
TTGAAGGTTCACTAGGGCCTGCCAA
LOC_Os04g31330
Os.9240.1.S1_at--63--7571Chr04:18555381..18555405 (25 bp)
GGGCCTGCCAACCATTCTAGGAGAA
LOC_Os04g31330
Os.9240.1.S1_at--88--5351Chr04:18555403..18555427 (25 bp)
GAAGATAGTAGCTCCCATTTGACTA
LOC_Os04g31330
Os.9240.1.S1_at--997--6331Chr04:18555460..18555484 (25 bp)
GATGCTATGTGTCCGAACTGCTGAG
LOC_Os04g31330
Os.9240.1.S1_at--1020--2111Chr04:18555490..18555514 (25 bp)
ACATGGACTGATTGGTGCCTTTTGA
LOC_Os04g31330
Os.9240.1.S1_at--68--6071Chr04:18555513..18555537 (25 bp)
GAGTTTAGATTGTCCCCTTGGTTAT
LOC_Os04g31330
Os.9240.1.S1_at--118--6751Chr04:18555632..18555656 (25 bp)
GTTCATATCCTTGCACACTTCATTT
LOC_Os04g31330
Os.9240.1.S1_at--227--191Chr04:18555653..18555677 (25 bp)
ATTTCCATGATCCAGTACCTTTGCA
LOC_Os04g31330
Os.9240.1.S1_at--766--9971Chr04:18555668..18555692 (25 bp)
TACCTTTGCACTTTGTAGGGTGGCC
LOC_Os04g31330
Os.9240.1.S1_at--357--6671Chr04:18555729..18555753 (25 bp)
GTTGCTGGAGCAATCTTATCTGGCA
LOC_Os04g31330
Target Sequence 
AGCATACCGTGCTTTTCTGGGAAGATATGGTAGTCTAGTGGATAGCGGAAGGAATTCAGGTAGATACATCAAATACACCC
CAGAGGACTTGGAGAATCAGCTGTCTGATCTATTTGAAGGTTCACTAGGGCCTGCCAACCATTCTAGGAGAAGATAGTAG
CTCCCATTTGACTAAATTTGGTGACAGGTATGCTTTTGCTACAAGGGATGCTATGTGTCCGAACTGCTGAGTCATCACAT
GGACTGATTGGTGCCTTTTGAGTTTAGATTGTCCCCTTGGTTATTACAATATTGTAATACTATACAAGGATCCCTTCGTT
TTTCTCCATCAGATTATATGTACCAAGAAGTGATGTACATACATTGCTTTTTCAGTGTGTTCATATCCTTGCACACTTCA
TTTCCATGATCCAGTACCTTTGCACTTTGTAGGGTGGCCAGTTCTTGGAATAGATCAGACAAGTAATAGGCATTTGTTGC
TGGAGCAATCTTATCTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis