Browse Element(s) Details


OsAffx.26296.1.S1_at

Description tigr:9632.m03140
TID=OsAffx.26296.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3287011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32840Os.49194.1.S1_at10/114+19638917..19640507expressed protein
LOC_Os04g32840OsAffx.22097.3.S1_at1/114+19638917..19640507expressed protein
LOC_Os04g32850Os.54602.1.S1_s_at11/114+19647736..19649497expressed protein
LOC_Os04g32850OsAffx.14103.1.S1_x_at11/114+19647736..19649497expressed protein
LOC_Os04g32850Os.27244.1.A1_s_at8/114+19647736..19649497expressed protein
LOC_Os04g32860Os.51171.1.S1_at11/114+19654178..19656880expressed protein
LOC_Os04g32870OsAffx.26296.1.S1_at11/114+19661722..19663182pentatricopeptide, putative
LOC_Os04g32880Os.48035.1.S1_at10/114+19663926..19671656CBS domain containing protein, expressed
LOC_Os04g32890Os.46500.1.S1_at9/114+19678051..19679973transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g32900NANA4+19687057..19687524transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26296.1.S1_at--604--4651Chr04:19662589..19662613 (25 bp)
GCGTGCCCGGAGAAGAACGTGTTCA
LOC_Os04g32870
OsAffx.26296.1.S1_at--183--2611Chr04:19662619..19662643 (25 bp)
AACGCGCTCATCGTCGGGCTGGCGA
LOC_Os04g32870
OsAffx.26296.1.S1_at--299--8531Chr04:19662668..19662692 (25 bp)
TGGACTACTTCGACCGGATGCTCGT
LOC_Os04g32870
OsAffx.26296.1.S1_at--162--6171Chr04:19662774..19662798 (25 bp)
GAGGATCTTCTACGAGATGCAGCAC
LOC_Os04g32870
OsAffx.26296.1.S1_at--523--6031Chr04:19662787..19662811 (25 bp)
GAGATGCAGCACAACCATGGCGTTC
LOC_Os04g32870
OsAffx.26296.1.S1_at--50--871Chr04:19662803..19662827 (25 bp)
ATGGCGTTCCTCGAGAGCTGAAGCA
LOC_Os04g32870
OsAffx.26296.1.S1_at--897--1491Chr04:19662824..19662848 (25 bp)
AGCACTACGGATGCATGGCTGACCT
LOC_Os04g32870
OsAffx.26296.1.S1_at--718--8051Chr04:19662882..19662906 (25 bp)
GGAGATGATCTCGAGCATGCCAATG
LOC_Os04g32870
OsAffx.26296.1.S1_at--167--6211Chr04:19662929..19662953 (25 bp)
GAGGCATACTCGCTGGCTGCAGAAT
LOC_Os04g32870
OsAffx.26296.1.S1_at--1035--6831Chr04:19662995..19663019 (25 bp)
GTTTGCTGGAGCTGAACCCTGACGA
LOC_Os04g32870
OsAffx.26296.1.S1_at--932--4412Chr04:19663036..19663060 (25 bp)
GCCATGGCTGGCATCTACGCTGATG
LOC_Os04g32870
Target Sequence 
GCGTGCCCGGAGAAGAACGTGTTCACCTGGAACGCGCTCATCGTCGGGCTGGCGATGCACGGCCATGGCACGGTGGCGCT
GGACTACTTCGACCGGATGCTCGTCGAAGGGTTCCGGCCAGACGGGACCACGTTCCTCGGCGTGCTGATCGGCTGCAGCC
ACGCCGGCCTCGTGGACACGGCGAGGAGGATCTTCTACGAGATGCAGCACAACCATGGCGTTCCTCGAGAGCTGAAGCAC
TACGGATGCATGGCTGACCTCCTTGGCCGAGCCGGGCTGATCGACGAGGCAATGGAGATGATCTCGAGCATGCCAATGGA
GGCGGACACGTATGTCTGGGGAGGCATACTCGCTGGCTGCAGAATGCACGGGAACAACGTGGAGTTCGCCGAGGTTGCTG
CCCGGCGTTTGCTGGAGCTGAACCCTGACGACGGTGGGGTGTACTCCGCCATGGCTGGCATCTACGCTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis