Browse Element(s) Details


OsAffx.26298.1.S1_at

Description tigr:9632.m03152
TID=OsAffx.26298.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=OTU-like cysteine protease, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3297011/11OTU-like cysteine protease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32950Os.11092.1.S1_at11/114+19725839..19729352Calnexin homolog precursor, putative, expressed
LOC_Os04g32960OsAffx.26297.1.S1_at11/114+19733609..19741980110 kDa 4SNc-Tudor domain protein, putative, expressed
LOC_Os04g32970OsAffx.26298.1.S1_at11/114+19745742..19750095OTU-like cysteine protease family protein, putative, expressed
LOC_Os04g32980Os.7576.1.S1_at11/114+19752713..19754760expressed protein
LOC_Os04g32989NANA4+19758111..19758547NA

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Gene Ontology Classification
GO idTypeName
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26298.1.S1_at--1025--251Chr04:19749210..19749234 (25 bp)
ATATGCCTTCTAACATCATTCAGAG
LOC_Os04g32970
OsAffx.26298.1.S1_at--638--51Chr04:19749252..19749276 (25 bp)
ATTGTTCCACAGTATCAGGCACCAC
LOC_Os04g32970
OsAffx.26298.1.S1_at--889--1191Chr04:19749545..19749569 (25 bp)
AGTTTCTGGTCGGAAGTTCACTATA
LOC_Os04g32970
OsAffx.26298.1.S1_at--378--3791Chr04:19749700..19749720 (21 bp)
CTCGAGATCTCCCTAGCAAATACAA
LOC_Os04g32970
OsAffx.26298.1.S1_at--54--8771Chr04:19749744..19749768 (25 bp)
TGTTTTAGTAACCACGCGGGAGCTT
LOC_Os04g32970
OsAffx.26298.1.S1_at--985--5911Chr04:19749763..19749787 (25 bp)
GAGCTTTGCTTTGGACATGGATTTT
LOC_Os04g32970
OsAffx.26298.1.S1_at--702--6491Chr04:19749813..19749837 (25 bp)
GATAGTTGGAGCTTGGAACCCTGAA
LOC_Os04g32970
OsAffx.26298.1.S1_at--623--1091Chr04:19749839..19749863 (25 bp)
AGTGGAATCCTCTGTGGTTCTCTTC
LOC_Os04g32970
OsAffx.26298.1.S1_at--202--6731Chr04:19749855..19749879 (25 bp)
GTTCTCTTCCTTGAAGCGCTGAATG
LOC_Os04g32970
OsAffx.26298.1.S1_at--789--4131Chr04:19749871..19749895 (25 bp)
CGCTGAATGGGTTTGCCGGATGCAC
LOC_Os04g32970
OsAffx.26298.1.S1_at--438--3591Chr04:19750041..19750065 (25 bp)
CATTTTATAGGCTGCTAGGTCTCTT
LOC_Os04g32970
Target Sequence 
ATATGCCTTCTAACATCATTCAGAGACACATGTTTTGTTGAAATTGTTCCACAGTATCAGGCACCACAGAGAGAAATTTG
GCTAAGTTTCTGGTCGGAAGTTCACTATAACTCGCTATATGATGCTCGAGATCTCCCTAGCAAATACAAGCCTAGGAAGA
AGCACTGGTTATTGTTTTAGTAACCACGCGGGAGCTTTGCTTTGGACATGGATTTTATTGCTTGGCCTTTTGGCCCCTCC
TGATAGTTGGAGCTTGGAACCCTGAAGAGTGGAATCCTCTGTGGTTCTCTTCCTTGAAGCGCTGAATGGGTTTGCCGGAT
GCACTCCTCACCACAGTACATACAGCATTAGTTATACTATAATACTGAGAGAATTTGAGATTGCTTCCTTGTGAATATAT
ACCCATAGGGAAATTACTGACATCCATGTTGATTGTAAACCATATTTGTTCATTGGTATATTCTGTATACATTTTATAGG
CTGCTAGGTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis