Browse Element(s) Details


OsAffx.26319.1.S1_at

Description tigr:9632.m03276
TID=OsAffx.26319.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable GTP-binding factor yhbZ (imported) - Escherichia coli (strain O157:H7, substrain EDL933)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3413011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34110NANA4+20486664..20490976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34120OsAffx.3992.1.S1_at11/114+20492641..20493051hypothetical protein
LOC_Os04g34130OsAffx.26319.1.S1_at11/114+20500825..20501776hypothetical protein
LOC_Os04g34140Os.9877.1.S1_at11/114+20503478..20505235U-box domain containing protein, expressed
LOC_Os04g34150OsAffx.14125.1.S1_at11/114+20511553..20511906hypothetical protein
LOC_Os04g34160OsAffx.3993.1.S1_at11/114+20515104..20516460hypothetical protein
LOC_Os04g34160OsAffx.25067.1.S1_at1/114+20515104..20516460hypothetical protein
LOC_Os04g34170Os.25734.2.S1_a_at11/114+20520646..20522441transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g34180OsAffx.14126.1.S1_at10/114+20525809..20529890hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26319.1.S1_at--400--1451Chr04:20500951..20500975 (25 bp)
AGAAGCGAAACAGCCAGAGAAAGTC
LOC_Os04g34130
OsAffx.26319.1.S1_at--926--2471Chr04:20500943..20500967 (25 bp)
AACAGCCAGAGAAAGTCGAATTCAT
LOC_Os04g34130
OsAffx.26319.1.S1_at--1--1431Chr04:20500934..20500958 (25 bp)
AGAAAGTCGAATTCATGTGGGATGA
LOC_Os04g34130
OsAffx.26319.1.S1_at--823--7211Chr04:20500929..20500953 (25 bp)
GTCGAATTCATGTGGGATGATTATC
LOC_Os04g34130
OsAffx.26319.1.S1_at--945--7991Chr04:20500915..20500939 (25 bp)
GGATGATTATCATCGCCAGCAGCTT
LOC_Os04g34130
OsAffx.26319.1.S1_at--277--6291Chr04:20500914..20500938 (25 bp)
GATGATTATCATCGCCAGCAGCTTG
LOC_Os04g34130
OsAffx.26319.1.S1_at--337--6551Chr04:20500911..20500935 (25 bp)
GATTATCATCGCCAGCAGCTTGAAG
LOC_Os04g34130
OsAffx.26319.1.S1_at--1094--10411Chr04:20500909..20500933 (25 bp)
TTATCATCGCCAGCAGCTTGAAGAG
LOC_Os04g34130
OsAffx.26319.1.S1_at--833--411Chr04:20500907..20500931 (25 bp)
ATCATCGCCAGCAGCTTGAAGAGAT
LOC_Os04g34130
OsAffx.26319.1.S1_at--1047--3531Chr04:20500905..20500929 (25 bp)
CATCGCCAGCAGCTTGAAGAGATTG
LOC_Os04g34130
OsAffx.26319.1.S1_at--352--6291Chr04:20500872..20500896 (25 bp)
GATGATGAAGACTGGGATGACGACT
LOC_Os04g34130
Target Sequence 
AGAAGCGAAACAGCCAGAGAAAGTCGAATTCATGTGGGATGATTATCATCGCCAGCAGCTTGAAGAGATTGCTGAAGAGG
ATGATGAAGACTGGGATGACGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis