Browse Element(s) Details


OsAffx.26339.1.S1_x_at

Description tigr:9632.m03373
TID=OsAffx.26339.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3508010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35050Os.19099.1.S1_x_at1/114+21112026..21113155retrotransposon, putative, centromere-specific
LOC_Os04g35060Os.18679.1.S1_at11/114+21123052..21130812nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os04g35070Os.51564.1.S1_at11/114+21132258..21133214expressed protein
LOC_Os04g35070Os.51564.1.S1_s_at11/114+21132258..21133214expressed protein
LOC_Os04g35080Os.9839.1.S1_at11/114+21135719..21139578Protein kinase domain containing protein, expressed
LOC_Os04g35080OsAffx.26339.1.S1_x_at10/114+21135719..21139578Protein kinase domain containing protein, expressed
LOC_Os04g35090Os.426.1.S1_at8/114+21142239..2114481040S ribosomal protein S10, putative, expressed
LOC_Os04g35100Os.8221.1.S1_a_at11/114+21144844..21148155MAP3K-like protein kinase, putative, expressed
LOC_Os04g35114Os.36212.1.S1_at10/114+21153387..21157199Protein kinase domain containing protein, expressed
LOC_Os04g35130Os.9065.1.S1_at11/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35130OsAffx.26340.1.S1_x_at10/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26339.1.S1_x_at--765--3211Chr04:21137799..21137823 (25 bp)
CAAGACCTGGAATGCTAAGCTTTCT
LOC_Os04g35080
OsAffx.26339.1.S1_x_at--685--8631Chr04:21137829..21137853 (25 bp)
TGGGCTAGCAAAGCTTTTGGGCTCA
LOC_Os04g35080
OsAffx.26339.1.S1_x_at--839--8631Chr04:21137975..21137997 (23 bp)
TGGGTACGTAGCTCCAGAGTATGCT
LOC_Os04g35080
OsAffx.26339.1.S1_x_at--1034--8211Chr04:21138053..21138077 (25 bp)
TGGAAATAATATCTGGTCGGGTACC
LOC_Os04g35080
OsAffx.26339.1.S1_x_at--919--5411Chr04:21138269..21138293 (25 bp)
GAAGCCTACTTCTAGGGCACTGAAG
LOC_Os04g35080
OsAffx.26339.1.S1_x_at--1131--5291Chr04:21138293..21138317 (25 bp)
GAAGGCTTTGTTAGTAGCTCTGCGA
LOC_Os04g35080
OsAffx.26339.1.S1_x_at--330--1191Chr04:21138305..21138329 (25 bp)
AGTAGCTCTGCGATGTGTAGACCCA
LOC_Os04g35080
OsAffx.26339.1.S1_x_at--217--791Chr04:21138317..21138341 (25 bp)
ATGTGTAGACCCAGAAGCCCGTAAG
LOC_Os04g35080
OsAffx.26339.1.S1_x_at--934--2811Chr04:21138376..21138400 (25 bp)
AAGTTGATGATTTTCCCTACAGAGA
LOC_Os04g35080
OsAffx.26339.1.S1_x_at--276--671NONE
ATGAACGTCGCGGTGGCAAAGCTCC
NONE
OsAffx.26339.1.S1_x_at--1097--8231Chr04:21138978..21139002 (25 bp)
GGCAAAGCTCCAGGTCAAGTGAAAT
LOC_Os04g35080
Target Sequence 
CAAGACCTGGAATGCTAAGCTTTCTGATTTTGGGCTAGCAAAGCTTTTGGGCTCAGAGAGGAGTTATGTAACAACCAGAG
TTATGGGGACATTTGGGTACGTAGCTCCAGAGTATGCTGGTACTGGCATGTTAAATGAAACTAGTGATGTCTATAGTTTT
GGAATTCTTATCATGGAAATAATATCTGGTCGGGTACCAGTGGATTACAACAGACCACCAGGGGAGGTTAATCTTGTTGA
ATGGCTGAAGACAATGGTGAGCAACCGAAACTCTGAAGGGGTTTTGGATCCAAAGATGACTGAGAAGCCTACTTCTAGGG
CACTGAAGAAGGCTTTGTTAGTAGCTCTGCGATGTGTAGACCCAGAAGCCCGTAAGAGGCCAAAGATTGGGCATGTCATT
CACATGCTTGAAGTTGATGATTTTCCCTACAGAGATGAACGTCGCGGTGGCAAAGCTCCAGGTCAAGTGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26339.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis