Browse Element(s) Details


OsAffx.26347.1.S1_at

Description tigr:9632.m03451
TID=OsAffx.26347.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3581011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35790Os.52185.1.A1_at11/114+21624777..21628755expressed protein
LOC_Os04g35800Os.51094.1.A1_at10/114+21630798..21636341Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g35810OsAffx.26347.1.S1_at11/114+21639715..21641126hypothetical protein
LOC_Os04g35820NANA4+21642556..21642867hypothetical protein
LOC_Os04g35830OsAffx.14166.1.S1_at8/114+21648529..21652604hypothetical protein
LOC_Os04g35840Os.9654.2.S1_x_at11/114+21655131..21660732T-complex protein 11 containing protein, expressed
LOC_Os04g35840Os.9654.1.S1_at9/114+21655131..21660732T-complex protein 11 containing protein, expressed
LOC_Os04g35849NANA4+21663556..21664279NA
LOC_Os04g35860Os.9654.2.S1_x_at3/114+21666100..21668934T-complex protein 11 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26347.1.S1_at--962--9631Chr04:21641055..21641079 (25 bp)
TCAGGTTCAGCTTCATATTTCAGGG
LOC_Os04g35810
OsAffx.26347.1.S1_at--830--3611Chr04:21641027..21641051 (25 bp)
CTTGACTACATGAGGCCCAACACAA
LOC_Os04g35810
OsAffx.26347.1.S1_at--339--8411Chr04:21641014..21641038 (25 bp)
GGCCCAACACAAATGGTAGCCTGGT
LOC_Os04g35810
OsAffx.26347.1.S1_at--823--9971Chr04:21640998..21641022 (25 bp)
TAGCCTGGTAGGAATGGTCAAGATG
LOC_Os04g35810
OsAffx.26347.1.S1_at--674--2491Chr04:21640971..21640995 (25 bp)
AACAGGGAATCCCAGATGTCCACCC
LOC_Os04g35810
OsAffx.26347.1.S1_at--1110--2411Chr04:21640939..21640963 (25 bp)
AAAACATTCACTCTCTCCGTTCAGG
LOC_Os04g35810
OsAffx.26347.1.S1_at--1128--1791Chr04:21640103..21640127 (25 bp)
ACCGCGTCCCGGTGGATGTGCTGCC
LOC_Os04g35810
OsAffx.26347.1.S1_at--890--9391Chr04:21640056..21640080 (25 bp)
TCGTTTCGCACGTCGCTTGGGTCGT
LOC_Os04g35810
OsAffx.26347.1.S1_at--87--131Chr04:21639949..21639973 (25 bp)
ATTACCTGACCTGCACCGTGGTCGG
LOC_Os04g35810
OsAffx.26347.1.S1_at--25--5011Chr04:21639793..21639817 (25 bp)
GCATGTGGCCGCTCAAGCTAGTGAG
LOC_Os04g35810
OsAffx.26347.1.S1_at--44--2711Chr04:21639779..21639803 (25 bp)
AAGCTAGTGAGCTTTGTTCCCTCGC
LOC_Os04g35810
Target Sequence 
TCAGGTTCAGCTTCATATTTCAGGGGCCCTTGACTACATGAGGCCCAACACAAATGGTAGCCTGGTAGGAATGGTCAAGA
TGACAACAGGGAATCCCAGATGTCCACCCCAAAACCAAAACATTCACTCTCTCCGTTCAGGCCACCGCGTCCCGGTGGAT
GTGCTGCCCCCCGACGGGAAGCTCCTCGCCTCGTTTCGCACGTCGCTTGGGTCGTTCCTCGCCGCCCACCGCTCGCCGCT
GCCGCGGGAGGAATGTGGCCGGCGTGATGAGGGACCTCACGGGCCTCCTCGGGCACCATTACCTGACCTGCACCGTGGTC
GGGAACAGTGGCGTGCTCCTCGGCTCCGGCCGTGGCCCGTTGACGCGCACAACCTCGTCATTCACCTCGACAACGCACGC
GTGGCGGAGCAGCACCCGCGGGAGAAGAAAAGAGAGGAGAAGAAAGAAACGCGGCATGTGGCCGCTCAAGCTAGTGAGCT
TTGTTCCCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis