Browse Element(s) Details


OsAffx.26350.1.S1_at

Description tigr:9632.m03468
TID=OsAffx.26350.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3597011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35930OsAffx.4004.1.S1_at11/114+21718563..21721490F-box domain containing protein
LOC_Os04g35930Os.22699.1.S1_at1/114+21718563..21721490F-box domain containing protein
LOC_Os04g35940Os.53263.1.S1_at11/114+21724773..21727000F-box domain containing protein, expressed
LOC_Os04g35950NANA4+21728660..21734783retrotransposon protein, putative, unclassified
LOC_Os04g35960NANA4+21735669..21738702retrotransposon protein, putative, unclassified
LOC_Os04g35970OsAffx.26350.1.S1_at11/114+21742721..21746176F-box domain containing protein
LOC_Os04g35980NANA4+21749621..21751791retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g35990OsAffx.14167.1.S1_at9/114+21754818..21759223F-box domain containing protein
LOC_Os04g35990OsAffx.26351.1.S1_at1/114+21754818..21759223F-box domain containing protein
LOC_Os04g36000OsAffx.26351.1.S1_at10/114+21761415..21764449F-box domain containing protein
LOC_Os04g36010OsAffx.26352.1.S1_at11/114+21769611..21773722hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26350.1.S1_at--1115--8531Chr04:21744006..21744030 (25 bp)
TGGAGCACATCACTACTGTTTGCAC
LOC_Os04g35970
OsAffx.26350.1.S1_at--647--6831Chr04:21743989..21744013 (25 bp)
GTTTGCACCCTTCTGGAAGTTCTAG
LOC_Os04g35970
OsAffx.26350.1.S1_at--874--1471Chr04:21743913..21743937 (25 bp)
AGAATTTGGTTCTGCATGGGCCTGC
LOC_Os04g35970
OsAffx.26350.1.S1_at--883--1111Chr04:21743761..21743782 (22 bp)
AGTGATGCCGTCTCTTGTCAGAGCA
LOC_Os04g35970
OsAffx.26350.1.S1_at--784--7111Chr04:21743745..21743769 (25 bp)
GTCAGAGCATCAATCCGTTTCAGTG
LOC_Os04g35970
OsAffx.26350.1.S1_at--213--10531Chr04:21743727..21743751 (25 bp)
TTCAGTGTTGTCTTTCCGTGCAAAT
LOC_Os04g35970
OsAffx.26350.1.S1_at--85--1291Chr04:21743057..21743081 (25 bp)
AGATGCCGTCCGAGTTACAACAATG
LOC_Os04g35970
OsAffx.26350.1.S1_at--116--711Chr04:21743035..21743059 (25 bp)
ATGAGTTATTGCGTCACCTTCTCCA
LOC_Os04g35970
OsAffx.26350.1.S1_at--1149--2691Chr04:21742992..21743015 (24 bp)
AAGCTCACTGTGCATTGCTGCAAGT
LOC_Os04g35970
OsAffx.26350.1.S1_at--1156--5111Chr04:21742884..21742905 (22 bp)
GCAAGTTCTCAAAAGGTTCCCTGGA
LOC_Os04g35970
OsAffx.26350.1.S1_at--822--8891Chr04:21742769..21742793 (25 bp)
TGAGCTTGTCGATCTTTTGCTGGAC
LOC_Os04g35970
Target Sequence 
TGGAGCACATCACTACTGTTTGCACCCTTCTGGAAGTTCTAGAGCTCAACAGATGTAGTCTCTATCTCCAAGAAATTACA
CATCCCAAGCTGAAGAATTTGGTTCTGCATGGGCCTGCAGTGATGCCGTCTCTTGTCAGAGCATCAATCCGTTTCAGTGT
TGTCTTTCCGTGCAAATGCAACTTTCTTAACGTGTTGTTTAATGTGACAAGTCTAGAATTGTCGGGTTTCCGTGAAATGG
TGCGGCTGGAGTTCAATCAAGTCGAATTCCATGCATTCAAAAACCTGAGGACCTTGTTGCTGGATAGATGCCGTCCGAGT
TACAACAATGAGTTATTGCGTCACCTTCTCCAGAACTCTCCTAATCTTGAGAAGCTCACTGTGCATTGCTGCAAGTTCTC
AAAAGGTTCCCTGGAGTGGAGGAAATCATCCCAGCATAAGAACCAGGTGAACTGTAGGAAGCTGAAGTCTACTGAAATCA
TATACAAGGACATTGATGATGTTCGTGAGCTTGTCGATCTTTTGCTGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis