Browse Element(s) Details


OsAffx.26400.1.S1_at

Description tigr:9632.m03801
TID=OsAffx.26400.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT002677 At1g70590F5A18_23
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4003011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39990NANA4+23581685..23587839retrotransposon protein, putative, unclassified
LOC_Os04g40000OsAffx.7292.1.S1_at1/114+23588460..23591443retrotransposon protein, putative, unclassified
LOC_Os04g40000OsAffx.7292.1.S1_x_at1/114+23588460..23591443retrotransposon protein, putative, unclassified
LOC_Os04g40010OsAffx.14212.1.S1_at11/114+23596314..23597951hypothetical protein
LOC_Os04g40020Os.56993.1.S1_at11/114+23599462..23600314expressed protein
LOC_Os04g40030OsAffx.26400.1.S1_at11/114+23607513..23609887F-box domain containing protein, expressed
LOC_Os04g40040Os.9293.1.S1_at11/114+23610611..23617066Copper amine oxidase, enzyme domain containing protein, expressed
LOC_Os04g40050Os.54130.1.S1_at3/114+23624499..23628458expressed protein
LOC_Os04g40060Os.6193.1.S1_at11/114+23630254..23634837transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26400.1.S1_at--546--7191Chr04:23608131..23608155 (25 bp)
GTCGGGATGTGCAATCTCGGCGTCT
LOC_Os04g40030
OsAffx.26400.1.S1_at--200--1611Chr04:23608481..23608505 (25 bp)
AGCTGATCCACCCAAGGCTGAGGAA
LOC_Os04g40030
OsAffx.26400.1.S1_at--821--1311Chr04:23608512..23608536 (25 bp)
AGATGGTTTTATCCAGCTGCGGCTG
LOC_Os04g40030
OsAffx.26400.1.S1_at--716--3011Chr04:23608542..23608566 (25 bp)
AATGCTCGTGCTCAATACAACCTGG
LOC_Os04g40030
OsAffx.26400.1.S1_at--233--5151Chr04:23609117..23609141 (25 bp)
GCAAAATGGTACCTGCGAGCTGCAG
LOC_Os04g40030
OsAffx.26400.1.S1_at--956--7031Chr04:23609164..23609188 (25 bp)
GTACAACATTTCCTTGTGCTACAAC
LOC_Os04g40030
OsAffx.26400.1.S1_at--1158--3131Chr04:23609238..23609262 (25 bp)
AATTAGCTGCTGATTGCGGTCACAA
LOC_Os04g40030
OsAffx.26400.1.S1_at--25--10131Chr04:23609737..23609761 (25 bp)
TATGTATCTAGAGTTGGCGACGCGC
LOC_Os04g40030
OsAffx.26400.1.S1_at--242--8071Chr04:23609765..23609789 (25 bp)
GGAGAAGCTGCTGCCTCACATATGA
LOC_Os04g40030
OsAffx.26400.1.S1_at--198--5251Chr04:23609804..23609828 (25 bp)
GAATCACTTTCCCTTGTGAATGCGC
LOC_Os04g40030
OsAffx.26400.1.S1_at--189--5271Chr04:23609821..23609845 (25 bp)
GAATGCGCAACGTGCCCTGTCAGAT
LOC_Os04g40030
Target Sequence 
GTCGGGATGTGCAATCTCGGCGTCTCCTACCTAGAAGCTGATCCACCCAAGGCTGAGGAAGCTGTTAGATGGTTTTATCC
AGCTGCGGCTGCTGGCAATGCTCGTGCTCAATACAACCTGGGCCTTTGCTTGCAGAATGGGAAAGGAATCAAGCGTAACC
AGCGGGAAGCTGCAAAATGGTACCTGCGAGCTGCAGAGGGAGGAAATGTGCGAGCCATGTACAACATTTCCTTGTGCTAC
AACTATGGTGAAGGATTTTCACAGGATCAAGTGCGTTCAAAGAGGTGGCTGCAATTAGCTGCTGATTGCGGTCACAAGAA
AGCTCTTTATGAATGTGGTATTAAACTTTGTGCGGCAGGAGACAAGGTGAGGTCTCTTATGTATCTAGAGTTGGCGACGC
GCCGTGGAGAAGCTGCTGCCTCACATATGAGGGATGTAATACTTGAATCACTTTCCCTTGTGAATGCGCAACGTGCCCTG
TCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis