Browse Element(s) Details


OsAffx.26434.1.S1_at

Description tigr:9632.m04086
TID=OsAffx.26434.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus glycoprotein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4274011/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42720Os.51743.1.S1_at11/114+25061855..25066004TMS membrane family protein, putative, expressed
LOC_Os04g42730Os.46012.2.S1_x_at7/114+25068569..25074240retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g42730Os.27088.1.A1_x_at5/114+25068569..25074240retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g42730Os.46012.3.S1_x_at4/114+25068569..25074240retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g42740OsAffx.26434.1.S1_at11/114+25078094..25080475D-mannose binding lectin family protein
LOC_Os04g42750OsAffx.1353.1.S1_x_at1/114+25083899..25085737transposon protein, putative, unclassified
LOC_Os04g42760Os.53077.1.S1_at11/114+25088049..25089515sialyltransferase, putative, expressed
LOC_Os04g42770Os.47741.1.S1_x_at11/114+25095177..25101346expressed protein
LOC_Os04g42770Os.47741.2.S1_at10/114+25095177..25101346expressed protein
LOC_Os04g42784Os.49455.1.S1_at11/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784OsAffx.14245.1.S1_x_at10/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784Os.56006.1.S1_at1/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784OsAffx.21705.1.S1_x_at1/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26434.1.S1_at--484--2451Chr04:25079882..25079906 (25 bp)
AAAATAGCGCTTGGTGTTGCCAGAG
LOC_Os04g42740
OsAffx.26434.1.S1_at--92--6171Chr04:25079904..25079928 (25 bp)
GAGGATTGGCCTACATGCATGGGAA
LOC_Os04g42740
OsAffx.26434.1.S1_at--899--8211Chr04:25079925..25079949 (25 bp)
GGAATTGTCTGGACTGCATCATACA
LOC_Os04g42740
OsAffx.26434.1.S1_at--760--1691Chr04:25080044..25080068 (25 bp)
AGCCAAGTTCTGACAACGGTACGAG
LOC_Os04g42740
OsAffx.26434.1.S1_at--166--7531Chr04:25080102..25080126 (25 bp)
GTGGAATGGCCATCTCATCAAAAGT
LOC_Os04g42740
OsAffx.26434.1.S1_at--1050--9751Chr04:25080202..25080226 (25 bp)
TAATGCTACCTATTTCCCGGTTCAG
LOC_Os04g42740
OsAffx.26434.1.S1_at--132--2991Chr04:25080251..25080275 (25 bp)
AATGTGCAATGCCTATTGGACCAAA
LOC_Os04g42740
OsAffx.26434.1.S1_at--894--2771Chr04:25080310..25080334 (25 bp)
AAGAGCTTGCCGAGTTGCTTGCTGG
LOC_Os04g42740
OsAffx.26434.1.S1_at--613--5491Chr04:25080355..25080379 (25 bp)
GAACAGACCGACCATGGCACAGGTA
LOC_Os04g42740
OsAffx.26434.1.S1_at--96--8251Chr04:25080370..25080394 (25 bp)
GGCACAGGTAGTCCATATACTTGAA
LOC_Os04g42740
OsAffx.26434.1.S1_at--781--2911Chr04:25080393..25080417 (25 bp)
AAGGCGTCTTAGAAGTCGACATGCC
LOC_Os04g42740
Target Sequence 
AAAATAGCGCTTGGTGTTGCCAGAGGATTGGCCTACATGCATGGGAATTGTCTGGACTGCATCATACATTGTGACATCAA
GCCACAGAATATTCTTTTGGATGCATCATTTGTTCCCAAGATTGCAGATTTTGGGATGTCAAAGCTCATGGGGAGAGATT
TTAGCCAAGTTCTGACAACGGTACGAGGAACTATCGGATATCTTGCGCCTGAATGGATTAGTGGAATGGCCATCTCATCA
AAAGTGGATGTTTACAGCTATGGAATGGTGCTGTTGGAAATCGTATTTGGAAGAAGAAATTTTAGAGGAGAGTGCACCAG
TAATGCTACCTATTTCCCGGTTCAGGTTGTTGGTAAACTCCTTCAGGGGAATGTGCAATGCCTATTGGACCAAAACATTC
AGAGTGACATCAATTCAGAAGAGGTTGAAAGAGCTTGCCGAGTTGCTTGCTGGTGTATTCAGGATGATGAATTGAACAGA
CCGACCATGGCACAGGTAGTCCATATACTTGAAGGCGTCTTAGAAGTCGACATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis