Browse Element(s) Details


OsAffx.26533.1.S1_at

Description tigr:9632.m04740
TID=OsAffx.26533.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4887011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48850Os.49507.1.S1_at11/114+28912714..289155861-aminocyclopropane-1-carboxylate synthase, putative, expressed
LOC_Os04g48860Os.5357.1.S1_at11/114+28930098..28931792expressed protein
LOC_Os04g48870OsAffx.26533.1.S1_at11/114+28933894..28934866expressed protein
LOC_Os04g48870Os.24786.1.S1_s_at11/114+28933894..28934866expressed protein
LOC_Os04g48880Os.8569.1.S1_at11/114+28938119..28940187beta-carotene hydroxylase, putative, expressed
LOC_Os04g48890OsAffx.26534.1.S1_at11/114+28941787..28942143hypothetical protein
LOC_Os04g48900NANA4+28949026..28951725retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os04g48910NANA4+28952146..28954859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g48920NANA4+28955475..28958400retrotransposon protein, putative, unclassified
LOC_Os04g48930Os.49111.1.S1_at9/114+28959795..28962564ferric-chelate reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26533.1.S1_at--652--2611Chr04:28934160..28934184 (25 bp)
AACCCAATAGTATCTAGCCGATCTG
LOC_Os04g48870
OsAffx.26533.1.S1_at--944--6891Chr04:28934169..28934193 (25 bp)
GTATCTAGCCGATCTGCTTCAAACA
LOC_Os04g48870
OsAffx.26533.1.S1_at--444--10651Chr04:28934599..28934623 (25 bp)
TTCCCAACAATACTTGTGCTCCATG
LOC_Os04g48870
OsAffx.26533.1.S1_at--507--8671Chr04:28934622..28934646 (25 bp)
TGTCCTGGTTTTAGGGATCTAGTTT
LOC_Os04g48870
OsAffx.26533.1.S1_at--1103--5832Chr12:9075152..9075171 (20 bp)
GATCTAGTTTAATTTATGTACGTAC
NONE
OsAffx.26533.1.S1_at--275--3171Chr04:28934706..28934730 (25 bp)
AATTGCTTTATCGTGTGTGTGCATG
LOC_Os04g48870
OsAffx.26533.1.S1_at--514--7331Chr04:28934724..28934748 (25 bp)
GTGCATGTTTCTGTATCTTTGTTTC
LOC_Os04g48870
OsAffx.26533.1.S1_at--95--751Chr04:28934728..28934752 (25 bp)
ATGTTTCTGTATCTTTGTTTCGGCC
LOC_Os04g48870
OsAffx.26533.1.S1_at--786--9471Chr04:28934733..28934757 (25 bp)
TCTGTATCTTTGTTTCGGCCTGTTA
LOC_Os04g48870
OsAffx.26533.1.S1_at--1034--8771Chr04:28934743..28934767 (25 bp)
TGTTTCGGCCTGTTATTTGTTGCAT
LOC_Os04g48870
OsAffx.26533.1.S1_at--738--4431Chr04:28934798..28934822 (25 bp)
GCCATCGAGGGCATAAGTTGTATTT
LOC_Os04g48870
Target Sequence 
AACCCAATAGTATCTAGCCGATCTGCTTCAAACATCTACCATACTAACCAAGTAGGCAATAACTCTGGCCTTCTTATCAC
GGACCGGCCGTCCACGAGAGTCCGTTGTGCGCCTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCT
AACGTGCAAGTGCAACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGGGGTGGAGC
AAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTGCCTCTGTATCTTCAGATATTTACGTTTA
TTCCCAACAATACTTGTGCTCCATGTCCTGGTTTTAGGGATCTAGTTTAATTTATGTACGTACGTGTGTGGCAAAGGTCT
CCGCCGTATGGTGTGAGGATGCGTGCTAATTGCTTTATCGTGTGTGTGCATGTTTCTGTATCTTTGTTTCGGCCTGTTAT
TTGTTGCATGGCTATTTGACATTATTGTTGTAAATTGTTGCCATCGAGGGCATAAGTTGTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis