Browse Element(s) Details


OsAffx.26542.1.S1_s_at

Description tigr:9632.m04828
TID=OsAffx.26542.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=pectinesterase inhibitor domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4972011/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49690Os.5431.1.S1_at11/114+29417103..29418943protein kinase family protein, putative, expressed
LOC_Os04g49700Os.51709.2.S1_at11/114+29421872..29423292Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g49710NANA4+29432720..29433136hypothetical protein
LOC_Os04g49720OsAffx.26542.1.S1_s_at11/114+29435004..29435635pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g49720OsAffx.26542.1.S1_at11/114+29435004..29435635pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g49730OsAffx.14347.1.S1_at11/114+29437004..29437564pectinesterase inhibitor domain containing protein
LOC_Os04g49739Os.25086.1.A1_at11/114+29439612..29441489purine permease family protein, putative, expressed
LOC_Os04g49748Os.20292.1.S1_s_at11/114+29441895..29443371purine permease family protein, putative, expressed
LOC_Os04g49748Os.20292.1.S1_at11/114+29441895..29443371purine permease family protein, putative, expressed
LOC_Os04g49748OsAffx.9915.1.S1_x_at1/114+29441895..29443371purine permease family protein, putative, expressed
LOC_Os04g49757Os.20614.3.S1_x_at11/114+29447058..29453541purine permease family protein, putative, expressed
LOC_Os04g49757Os.20614.2.S1_at11/114+29447058..29453541purine permease family protein, putative, expressed
LOC_Os04g49770OsAffx.14349.1.A1_at11/114+29454372..29455993hypothetical protein
LOC_Os04g49780NANA4+29457852..29461477transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26542.1.S1_s_at--668--3831Chr04:29435262..29435286 (25 bp)
CTGCGATCCTCGCACAAGGAGGAGA
LOC_Os04g49720
OsAffx.26542.1.S1_s_at--619--2791Chr04:29435286..29435310 (25 bp)
AAGATGCAGGAGTGCCTCCGCATAA
LOC_Os04g49720
OsAffx.26542.1.S1_s_at--1085--4951Chr04:29435305..29435329 (25 bp)
GCATAAGCTCCGACCTGTACGCCTA
LOC_Os04g49720
OsAffx.26542.1.S1_s_at--529--8751Chr04:29435320..29435344 (25 bp)
TGTACGCCTACATGCTGGCCGTTCT
LOC_Os04g49720
OsAffx.26542.1.S1_s_at--1026--4491Chr04:29435337..29435361 (25 bp)
GCCGTTCTCGGCAACGAGGCGAAAG
LOC_Os04g49720
OsAffx.26542.1.S1_s_at--73--2451Chr04:29435466..29435490 (25 bp)
AACAAGGAGACCCTGCCGCTGGTTG
LOC_Os04g49720
OsAffx.26542.1.S1_s_at--1085--3891Chr04:29435484..29435508 (25 bp)
CTGGTTGCGGAGTACGCCGAGTTTA
LOC_Os04g49720
OsAffx.26542.1.S1_s_at--1103--6811Chr04:29435504..29435528 (25 bp)
GTTTAGACAGAGTGCGTCCATTGCT
LOC_Os04g49720
OsAffx.26542.1.S1_s_at--367--4011Chr04:29435518..29435542 (25 bp)
CGTCCATTGCTCTCGCATTGATAGA
LOC_Os04g49720
OsAffx.26542.1.S1_s_at--866--251Chr04:29435538..29435562 (25 bp)
ATAGAGGCGATATCACCACCGAGTG
LOC_Os04g49720
OsAffx.26542.1.S1_s_at--102--5291Chr04:29435569..29435593 (25 bp)
GAATGTGTGTTTTTACTCTCAGATT
LOC_Os04g49720
Target Sequence 
CTGCGATCCTCGCACAAGGAGGAGAAGATGCAGGAGTGCCTCCGCATAAGCTCCGACCTGTACGCCTACATGCTGGCCGT
TCTCGGCAACGAGGCGAAAGCCGCCGCCCTGGTGGACGGCGGCGCGCAGCATGCGGCGGCGTCGCCGCCAACGCCCGACG
TCGCGCGGTATGTCGCGGATGGTTGCGAGGGCAGGTTCCGTGGGAACAAGGAGACCCTGCCGCTGGTTGCGGAGTACGCC
GAGTTTAGACAGAGTGCGTCCATTGCTCTCGCATTGATAGAGGCGATATCACCACCGAGTGATCAGTGAATGTGTGTTTT
TACTCTCAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26542.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis