Browse Element(s) Details


OsAffx.2657.1.S1_at

Description tigr:9630.m01662
TID=OsAffx.2657.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1773011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17710Os.26907.1.S1_at11/112+10213161..10216348Leucine Rich Repeat family protein, expressed
LOC_Os02g17710Os.33851.3.A1_x_at1/112+10213161..10216348Leucine Rich Repeat family protein, expressed
LOC_Os02g17714NANA2+10226796..10228777hypothetical protein
LOC_Os02g17720Os.45957.4.S1_x_at1/112+10230581..10235374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g17730OsAffx.2657.1.S1_at11/112+10239686..10240108Leucine Rich Repeat family protein
LOC_Os02g17740Os.47463.1.S1_x_at5/112+10241914..10245611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17740Os.14491.2.S1_x_at4/112+10241914..10245611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17750NANA2+10248300..10251632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17760Os.41248.2.A1_at11/112+10261984..10268670Cytochrome P450 family protein, expressed
LOC_Os02g17760Os.41248.5.S1_x_at5/112+10261984..10268670Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2657.1.S1_at--214--6971Chr02:10239951..10239975 (25 bp)
GTAGCTGCCTAAACTCATGGACCAA
LOC_Os02g17730
OsAffx.2657.1.S1_at--1092--2871Chr02:10239928..10239952 (25 bp)
AAGGGCACCAACACATGCAACTGGA
LOC_Os02g17730
OsAffx.2657.1.S1_at--187--3951Chr02:10239902..10239926 (25 bp)
CGGCATCGTCTGCAGCACAAGTGAT
LOC_Os02g17730
OsAffx.2657.1.S1_at--341--6351Chr02:10239877..10239901 (25 bp)
GATGCCCCAGGTATTCTCAGTATTT
LOC_Os02g17730
OsAffx.2657.1.S1_at--974--6871Chr02:10239858..10239882 (25 bp)
GTATTTCGCTTAACTCGTGTGGCAT
LOC_Os02g17730
OsAffx.2657.1.S1_at--1122--3971Chr02:10239843..10239867 (25 bp)
CGTGTGGCATCTCCGGCAATTTGGA
LOC_Os02g17730
OsAffx.2657.1.S1_at--914--2091Chr02:10239826..10239850 (25 bp)
AATTTGGACGGGTTCTGGTTTGCAG
LOC_Os02g17730
OsAffx.2657.1.S1_at--680--431Chr02:10239792..10239816 (25 bp)
ATCTTCAAGGACTCGACCTCGGAAA
LOC_Os02g17730
OsAffx.2657.1.S1_at--901--5531Chr02:10239771..10239795 (25 bp)
GAAACAACTCTATCTCTGGGCCTAT
LOC_Os02g17730
OsAffx.2657.1.S1_at--643--10131Chr02:10239749..10239773 (25 bp)
TATCCCATCAAGCATAGGTCGTCTT
LOC_Os02g17730
OsAffx.2657.1.S1_at--742--7131Chr02:10239729..10239753 (25 bp)
GTCTTGTCGACCTCTTTGATTTGGA
LOC_Os02g17730
Target Sequence 
GTAGCTGCCTAAACTCATGGACCAAGGGCACCAACACATGCAACTGGACCGGCATCGTCTGCAGCACAAGTGATGATGCC
CCAGGTATTCTCAGTATTTCGCTTAACTCGTGTGGCATCTCCGGCAATTTGGACGGGTTCTGGTTTGCAGAATTCCCCCA
TCTTCAAGGACTCGACCTCGGAAACAACTCTATCTCTGGGCCTATCCCATCAAGCATAGGTCGTCTTGTCGACCTCTTTG
ATTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis