Browse Element(s) Details


OsAffx.26577.1.S1_at

Description tigr:9632.m05105
TID=OsAffx.26577.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g526804/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52650Os.7420.1.S1_s_at11/114+31110670..31112273expressed protein
LOC_Os04g52650OsAffx.26576.1.S1_at10/114+31110670..31112273expressed protein
LOC_Os04g52660Os.27304.1.A1_at11/114+31121219..31125663expressed protein
LOC_Os04g52670OsAffx.14380.1.S1_s_at11/114+31130595..31131661Auxin responsive protein, expressed
LOC_Os04g52680OsAffx.26577.1.S1_at4/114+31135177..31136141hypothetical protein
LOC_Os04g52690Os.25046.1.S1_at10/114+31145050..31150338AAA-type ATPase family protein, putative, expressed
LOC_Os04g52700OsAffx.14381.1.S1_x_at11/114+31160287..31161664expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26577.1.S1_at--482--6174Chr12:2360232..2360342 (25 bp)
GAGGATGACAGGAATGAATTGCCAC
NONE
OsAffx.26577.1.S1_at--944--6311NONE
GATGACAGGAATGAATTGCCACGAT
NONE
OsAffx.26577.1.S1_at--814--5651NONE
GACAGGAATGAATTGCCACGATCTA
NONE
OsAffx.26577.1.S1_at--1127--3471NONE
CAGGAATGAATTGCCACGATCTAAA
NONE
OsAffx.26577.1.S1_at--156--5271NONE
GAATGAATTGCCACGATCTAAACAG
NONE
OsAffx.26577.1.S1_at--380--9011NONE
TGAATTGCCACGATCTAAACAGGTC
NONE
OsAffx.26577.1.S1_at--821--3151NONE
AATTGCCACGATCTAAACAGGTCCT
NONE
OsAffx.26577.1.S1_at--160--10671NONE
TTGCCACGATCTAAACAGGTCCTAA
NONE
OsAffx.26577.1.S1_at--259--4412Chr04:31136086..31136105 (20 bp)
GCCACGATCTAAACAGGTCCTAAGT
LOC_Os04g52680
OsAffx.26577.1.S1_at--387--4051Chr04:31136086..31136109 (24 bp)
CGATCTAAACAGGTCCTAAGTGCAA
LOC_Os04g52680
OsAffx.26577.1.S1_at--924--352Chr04:31136087..31136111 (25 bp)
ATCTAAACAGGTCCTAAGTGCAAAA
LOC_Os04g52680
Target Sequence 
GAGGATGACAGGAATGAATTGCCACGATCTAAACAGGTCCTAAGTGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis