Browse Element(s) Details


OsAffx.14380.1.S1_s_at

Description tigr:9632.m05104
TID=OsAffx.14380.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Auxin responsive protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5267011/11Auxin responsive protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52640Os.27084.2.S1_a_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.1.A1_a_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.2.S1_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.2.S1_x_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.1.A2_at10/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.47793.1.A1_at6/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52650Os.7420.1.S1_s_at11/114+31110670..31112273expressed protein
LOC_Os04g52650OsAffx.26576.1.S1_at10/114+31110670..31112273expressed protein
LOC_Os04g52660Os.27304.1.A1_at11/114+31121219..31125663expressed protein
LOC_Os04g52670OsAffx.14380.1.S1_s_at11/114+31130595..31131661Auxin responsive protein, expressed
LOC_Os04g52680OsAffx.26577.1.S1_at4/114+31135177..31136141hypothetical protein
LOC_Os04g52690Os.25046.1.S1_at10/114+31145050..31150338AAA-type ATPase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14380.1.S1_s_at--447--9251Chr04:31130902..31130926 (25 bp)
TCCTACTTCAGCGTGGTGGTCTGAA
LOC_Os04g52670
OsAffx.14380.1.S1_s_at--505--7491Chr04:31130887..31130911 (25 bp)
GTGGTCTGAATCTGATCGAACCTGC
LOC_Os04g52670
OsAffx.14380.1.S1_s_at--1018--471Chr04:31130878..31130902 (25 bp)
ATCTGATCGAACCTGCAGCTAGCTA
LOC_Os04g52670
OsAffx.14380.1.S1_s_at--274--3711Chr04:31130856..31130880 (25 bp)
CTAGCACATGTAGTAGCGTAGCGTT
LOC_Os04g52670
OsAffx.14380.1.S1_s_at--832--1571Chr04:31130842..31130866 (25 bp)
AGCGTAGCGTTGATCCCTTTCTTGA
LOC_Os04g52670
OsAffx.14380.1.S1_s_at--340--9431Chr04:31130776..31130800 (25 bp)
TCGTGTGCTCGTGTGGCTGTTCTAG
LOC_Os04g52670
OsAffx.14380.1.S1_s_at--625--9671Chr04:31130746..31130770 (25 bp)
TCACCTTCTTGCTTTGCTTTCTGGA
LOC_Os04g52670
OsAffx.14380.1.S1_s_at--20--4891Chr04:31130731..31130755 (25 bp)
GCTTTCTGGAGGCTCTCTTTTATTA
LOC_Os04g52670
OsAffx.14380.1.S1_s_at--35--3771Chr04:31130717..31130741 (25 bp)
CTCTTTTATTAGCTTTGATTCCATT
LOC_Os04g52670
OsAffx.14380.1.S1_s_at--457--10231Chr04:31130694..31130718 (25 bp)
TTTGTTTCTTGGCTTCTTCTACTAC
LOC_Os04g52670
OsAffx.14380.1.S1_s_at--862--9532Chr06:24233249..24233739 (25 bp)
TCTACTACTACTCCTTTTTCCTTCT
NONE
Target Sequence 
TCCTACTTCAGCGTGGTGGTCTGAATCTGATCGAACCTGCAGCTAGCTAGCACATGTAGTAGCGTAGCGTTGATCCCTTT
CTTGATGAGGAGGCGTGTAGCTGTTGTGCAGGAGGCGTGCGTTGTGTCGTGTGCTCGTGTGGCTGTTCTAGCTCGCTCAC
CTTCTTGCTTTGCTTTCTGGAGGCTCTCTTTTATTAGCTTTGATTCCATTTGTTTCTTGGCTTCTTCTACTACTACTCCT
TTTTCCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14380.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis