Browse Element(s) Details


Os.27084.1.A1_a_at

Description gb:AK112032.1
DB_XREF= gi:37988695
TID=Os.27084.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.27084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-040-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B01, full insert sequence.
FL= gb:AK111529.1 gb:AK112032.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5264011/11SHR5-receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52614OsAffx.4157.1.S1_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614OsAffx.4157.1.S1_x_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27242.1.S1_x_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27242.1.S1_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.53743.1.S1_at10/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.54061.1.S1_x_at10/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27084.2.S1_at1/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27084.2.S1_x_at1/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.17112.1.S1_at1/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52630Os.52059.1.S1_at11/114+31089687..31091174Protein kinase domain containing protein, expressed
LOC_Os04g52630Os.27084.2.S1_at1/114+31089687..31091174Protein kinase domain containing protein, expressed
LOC_Os04g52630OsAffx.4157.1.S1_x_at1/114+31089687..31091174Protein kinase domain containing protein, expressed
LOC_Os04g52630Os.27084.2.S1_x_at1/114+31089687..31091174Protein kinase domain containing protein, expressed
LOC_Os04g52640Os.27084.2.S1_a_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.1.A1_a_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.2.S1_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.2.S1_x_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.1.A2_at10/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.47793.1.A1_at6/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52650Os.7420.1.S1_s_at11/114+31110670..31112273expressed protein
LOC_Os04g52650OsAffx.26576.1.S1_at10/114+31110670..31112273expressed protein
LOC_Os04g52660Os.27304.1.A1_at11/114+31121219..31125663expressed protein
LOC_Os04g52670OsAffx.14380.1.S1_s_at11/114+31130595..31131661Auxin responsive protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27084.1.A1_a_at--586--8351Chr04:31099902..31099926 (25 bp)
GGCGGCGAAGCCCAGCTACATCACG
LOC_Os04g52640
Os.27084.1.A1_a_at--854--9271Chr04:31099730..31099754 (25 bp)
TCCGTCGTCGACGAAGGCAGGTGAC
LOC_Os04g52640
Os.27084.1.A1_a_at--578--3831Chr04:31099693..31099717 (25 bp)
CTGCTCGCCGGTGCTTGGTTCGGAT
LOC_Os04g52640
Os.27084.1.A1_a_at--991--9051Chr04:31099682..31099706 (25 bp)
TGCTTGGTTCGGATCAAACTTCTCA
LOC_Os04g52640
Os.27084.1.A1_a_at--750--2391Chr04:31099667..31099691 (25 bp)
AAACTTCTCAAGAAACGGGCAGATA
LOC_Os04g52640
Os.27084.1.A1_a_at--1147--3951Chr04:31099652..31099676 (25 bp)
CGGGCAGATAATAGCGTCAAAATAC
LOC_Os04g52640
Os.27084.1.A1_a_at--539--7631Chr04:31099615..31099639 (25 bp)
GGGACTCGAAATAAAACCGCTGCTC
LOC_Os04g52640
Os.27084.1.A1_a_at--386--9811Chr04:31099604..31099628 (25 bp)
TAAAACCGCTGCTCAAAACCACGGG
LOC_Os04g52640
Os.27084.1.A1_a_at--609--8032Chr09:18476378..18476683 (25 bp)
GGAGATAGATTGTACCGGTTTTAAT
NONE
Os.27084.1.A1_a_at--573--10071Chr04:31099550..31099574 (25 bp)
TAGGGAGTTATCTCACACGGTTTTC
LOC_Os04g52640
Os.27084.1.A1_a_at--1073--3271Chr04:31099535..31099559 (25 bp)
CACGGTTTTCCGGTCAAGACATACA
LOC_Os04g52640
Target Sequence 
GGCGGCGAAGCCCAGCTACATCACGGAGTGGCAGATCAAGGGCGGCGGCACCACCACCACCACCACCGGCTCNTCGTCCA
CGAGCAGCAGCGCCGCCAACGGGCAGTGGAGCTCGGCGCCGCCGCCGCCGAGGGCCACCTCCTCGCCGAAGATGTCGTCG
CCGTTCTTGAGCTCCGTCGTCGACGAAGGCAGGTGACGGCTTCGCGCCGCTGCTCGCCGGTGCTTGGTTCGGATCAAACT
TCTCAAGAAACGGGCAGATAATAGCGTCAAAATACGTTGGTTTTTTAGGGACTCGAAATAAAACCGCTGCTCAAAACCAC
GGGGGGAGATAGATTGTACCGGTTTTAATAATTAGGGAGTTATCTCACACGGTTTTCCGGTCAAGACATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27084.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis