Browse Element(s) Details


Os.47793.1.A1_at

Description gb:BX927826
DB_XREF= gi:41882252
DB_XREF=BX927826
CLONE=p775c05p3
TID=Os.47793.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47793 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g526406/11SHR5-receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52614OsAffx.4157.1.S1_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614OsAffx.4157.1.S1_x_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27242.1.S1_x_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27242.1.S1_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.53743.1.S1_at10/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.54061.1.S1_x_at10/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27084.2.S1_at1/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27084.2.S1_x_at1/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.17112.1.S1_at1/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52630Os.52059.1.S1_at11/114+31089687..31091174Protein kinase domain containing protein, expressed
LOC_Os04g52630Os.27084.2.S1_at1/114+31089687..31091174Protein kinase domain containing protein, expressed
LOC_Os04g52630OsAffx.4157.1.S1_x_at1/114+31089687..31091174Protein kinase domain containing protein, expressed
LOC_Os04g52630Os.27084.2.S1_x_at1/114+31089687..31091174Protein kinase domain containing protein, expressed
LOC_Os04g52640Os.27084.2.S1_a_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.1.A1_a_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.2.S1_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.2.S1_x_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.1.A2_at10/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.47793.1.A1_at6/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52650Os.7420.1.S1_s_at11/114+31110670..31112273expressed protein
LOC_Os04g52650OsAffx.26576.1.S1_at10/114+31110670..31112273expressed protein
LOC_Os04g52660Os.27304.1.A1_at11/114+31121219..31125663expressed protein
LOC_Os04g52670OsAffx.14380.1.S1_s_at11/114+31130595..31131661Auxin responsive protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47793.1.A1_at--320--8831Chr04:31103290..31103314 (25 bp)
TGAGTTTAAGCCCAAGTATTCCCCT
LOC_Os04g52640
Os.47793.1.A1_at--818--1651NONE
AGCCCAAGTATTCCCCTAATACAAT
NONE
Os.47793.1.A1_at--1076--10211NONE
TATTCCCCTAATACAATCATCTGTT
NONE
Os.47793.1.A1_at--658--3731NONE
CTAATACAATCATCTGTTCCAGTAG
NONE
Os.47793.1.A1_at--382--3191NONE
CAATCATCTGTTCCAGTAGAACGAT
NONE
Os.47793.1.A1_at--260--6691NONE
GTTCCAGTAGAACGATGTATTTTAG
NONE
Os.47793.1.A1_at--1094--6851Chr04:31103226..31103252 (25 bp)
GTATTTTAGGGTTAACTGTTGCATT
LOC_Os04g52640
Os.47793.1.A1_at--996--7671Chr04:31103218..31103242 (25 bp)
GGGTTAACTGTTGCATTCCATTGTA
LOC_Os04g52640
Os.47793.1.A1_at--120--2572Chr04:31103213..31103237 (25 bp)
AACTGTTGCATTCCATTGTAAGATT
LOC_Os04g52640
Os.47793.1.A1_at--931--3591Chr04:31103205..31103229 (25 bp)
CATTCCATTGTAAGATTGCATTTTT
LOC_Os04g52640
Os.47793.1.A1_at--883--51Chr04:31103190..31103215 (25 bp)
ATTGCATTTTTTTTCTAACAGGTGA
LOC_Os04g52640
Target Sequence 
TGAGTTTAAGCCCAAGTATTCCCCTAATACAATCATCTGTTCCAGTAGAACGATGTATTTTAGGGTTAACTGTTGCATTC
CATTGTAAGATTGCATTTTTTTTCTAACAGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47793.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis